Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 2.7e-189 665.2 348 100.0
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 2.1e-170 602.4 345 91.0
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 3.7e-170 601.7 348 91.4
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 8.1e-170 600.5 348 91.4
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.3e-167 593.2 345 89.3
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 1.1e-166 590.1 347 90.2
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 5.5e-166 587.8 348 89.1
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 5.5e-166 587.8 348 88.8
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 2.7e-165 585.5 348 88.8
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 2.7e-165 585.5 348 88.8
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.0e-164 583.6 346 89.0
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.3e-164 583.2 345 89.0
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 2.4e-153 545.8 395 75.9
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 2.5e-142 509.2 302 85.8
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 2.7e-128 462.6 310 75.2
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 2.1e-125 453.0 310 75.2
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 5.2e-124 448.4 343 67.6
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 8.8e-124 447.6 310 73.5
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 3.4e-123 445.7 315 72.4
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.2e-122 443.0 310 73.2
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.8e-122 442.6 318 71.7
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 4.8e-122 441.8 324 70.1
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 1.1e-121 440.7 303 73.3
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.4e-121 440.3 312 72.1
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 2.4e-121 439.5 306 71.9
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 5.4e-121 438.3 332 68.7
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 1.2e-120 437.2 305 73.4
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 3.5e-120 435.6 320 69.4
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 5.9e-120 434.9 321 68.5
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.0e-119 434.1 303 74.6
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.7e-119 433.3 321 69.5
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.7e-119 433.3 303 74.3
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.7e-119 433.3 360 64.7
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 2.2e-119 433.0 350 65.7
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 3.8e-119 432.2 314 72.9
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 1.1e-118 430.6 355 64.2
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 1.5e-118 430.3 318 69.2
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.5e-118 429.5 353 63.5
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 9.4e-118 427.6 331 65.9
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 2.1e-117 426.4 341 65.4
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 2.7e-117 426.0 318 68.6
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 2.7e-117 426.0 332 66.9
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 6.1e-117 424.9 339 65.2
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 1.8e-116 423.3 306 68.6
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.3e-116 422.9 332 67.2
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.3e-116 422.9 291 72.2
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 2.3e-116 422.9 341 64.2
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 4.0e-116 422.2 353 62.0
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 8.8e-116 421.0 330 67.9
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.5e-115 420.2 290 71.7
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 2.0e-115 419.9 331 65.0
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.6e-115 419.5 348 64.4
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 3.4e-115 419.1 326 65.3
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.3e-114 417.2 290 71.4
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.7e-114 416.8 290 71.4
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 2.8e-114 416.0 332 66.6
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.8e-114 416.0 291 71.8
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 2.8e-114 416.0 301 70.8
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 6.3e-114 414.8 337 65.0
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 6.3e-114 414.8 290 70.3
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 8.3e-114 414.5 312 67.0
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 8.3e-114 414.5 317 67.2
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 8.3e-114 414.5 290 71.0
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.1e-113 414.1 345 64.9
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 4.1e-113 412.1 335 64.5
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 2.0e-112 409.8 287 71.1
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 2.7e-112 409.5 317 67.2
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 3.5e-112 409.1 333 65.2
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 5.0e-111 405.2 330 63.3
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 8.6e-111 404.4 331 65.0
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 8.6e-111 404.4 299 68.2
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 3.3e-110 402.5 330 65.2
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 8.0e-109 397.9 303 65.3
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 3.4e-107 392.5 319 65.5
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.5e-107 391.3 298 69.1
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 9.8e-107 391.0 331 63.1
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 4.9e-106 388.7 282 70.6
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 2.0e-104 383.3 359 61.6
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.5e-104 382.5 265 73.6
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 4.6e-104 382.1 309 63.8
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 5.0e-103 378.6 320 63.1
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 6.2e-101 371.7 308 60.4
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 1.5e-99 367.1 438 48.2
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 3.0e-95 352.8 459 45.5
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.9e-94 350.1 318 60.1
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 5.6e-94 348.6 265 63.8
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 1.6e-93 347.1 342 56.7
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.4e-92 344.0 365 54.8
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 4.9e-90 335.5 578 39.8
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 6.4e-90 335.1 235 71.5
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 2.4e-89 333.2 234 69.2
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.2e-88 330.9 249 68.3
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.9e-87 325.9 289 59.2
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.9e-86 323.6 275 59.3
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.9e-86 323.6 295 57.3
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.4e-84 317.4 232 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.0e-83 313.5 288 56.6
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.7e-82 310.5 213 72.3
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 3.2e-81 306.2 291 54.6
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 2.3e-79 300.1 251 64.1
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.1e-78 297.7 350 51.1
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.7e-74 283.9 184 75.5
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.0e-60 236.1 197 64.5
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 7.9e-56 221.9 310 42.3
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 7.9e-56 221.9 142 75.4
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 3.9e-55 219.5 206 54.9
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 5.6e-54 215.7 168 62.5
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 9.6e-54 214.9 197 60.4
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 2.2e-50 203.8 334 38.3
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 7.1e-49 198.7 193 51.3
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 8.7e-47 191.8 327 39.8
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.9e-46 190.7 200 53.5
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 2.5e-46 190.3 109 90.8
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 1.5e-38 164.5 92 95.7
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 1.7e-34 151.0 214 42.1
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 6.3e-29 132.5 213 37.6
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 2.2e-26 124.0 100 65.0
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 7.9e-24 115.5 84 65.5
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.8e-23 114.4 82 65.9
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.8e-21 107.1 132 50.8
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 4.1e-20 103.2 54 94.4
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 6.5e-18 95.9 72 63.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.3e-13 81.6 169 32.0
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 3.7e-13 80.1 55 65.5
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.0e-11 74.3 58 69.0
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.0e-10 72.0 58 67.2
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.0e-10 72.0 58 67.2
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.0e-10 72.0 58 67.2
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.0e-10 72.0 58 67.2
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.0e-10 72.0 58 67.2
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-10 71.6 58 67.2
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 2.9e-10 70.5 108 42.6
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.5e-10 69.3 58 65.5
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 3.4e-06 57.0 38 73.7


User provided reference genes

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