Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.1e-205 718.8 355 100.0
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.2e-179 633.3 357 88.5
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 2.0e-176 622.5 358 88.0
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 2.3e-175 619.0 358 87.4
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 4.3e-174 614.8 357 87.4
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.6e-173 612.8 357 87.4
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.1e-173 612.5 357 87.4
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.8e-171 604.4 330 90.0
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.9e-166 589.3 330 88.2
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 1.9e-166 589.3 332 87.3
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 9.5e-166 587.0 331 86.4
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.8e-165 585.5 330 88.2
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 3.6e-165 585.1 330 85.2
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.2e-162 575.9 345 83.5
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 1.2e-160 570.1 367 76.3
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 5.2e-148 528.1 332 76.8
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 2.4e-145 519.2 346 74.0
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 6.0e-144 514.6 331 72.2
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 2.3e-143 512.7 332 72.3
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 5.1e-143 511.5 345 68.4
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 6.6e-143 511.1 341 70.7
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.3e-142 508.8 291 85.6
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.2e-141 506.9 352 68.8
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 2.8e-141 505.8 329 72.0
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 2.8e-141 505.8 335 70.7
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.7e-141 505.0 345 71.3
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 8.1e-141 504.2 338 73.4
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 9.0e-140 500.7 335 71.0
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 9.0e-140 500.7 354 66.9
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.5e-139 500.0 329 72.0
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.5e-139 500.0 332 70.8
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.4e-139 498.4 284 85.9
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.9e-138 495.0 341 69.2
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.4e-137 493.4 323 70.0
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.4e-137 492.7 342 67.5
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.4e-137 491.5 325 70.8
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 9.3e-137 490.7 336 68.8
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.2e-136 490.3 341 68.6
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 2.7e-136 489.2 337 68.2
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.0e-136 488.0 334 68.3
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 6.0e-136 488.0 330 70.9
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.1e-134 483.8 339 68.1
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.1e-134 483.8 329 68.7
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.5e-134 483.4 346 65.0
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.9e-134 483.0 337 67.7
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.6e-134 481.5 343 67.3
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 5.6e-134 481.5 322 69.9
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 9.6e-134 480.7 337 68.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.6e-133 479.9 332 65.7
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 6.2e-133 478.0 341 66.6
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 6.2e-133 478.0 340 66.8
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.8e-132 476.5 322 70.8
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 2.4e-132 476.1 325 68.6
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.4e-132 476.1 319 71.5
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 4.0e-132 475.3 337 68.2
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.3e-132 474.9 319 70.8
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 9.0e-132 474.2 324 68.5
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 1.5e-131 473.4 335 66.9
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 2.6e-131 472.6 343 65.9
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.6e-131 472.6 337 65.3
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 9.9e-131 470.7 332 67.5
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 2.9e-130 469.2 325 68.3
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.6e-128 463.4 333 65.8
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 1.6e-128 463.4 370 61.6
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.7e-128 462.6 324 67.6
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.3e-127 460.3 324 67.3
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.0e-127 459.1 362 61.3
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.6e-125 453.4 239 92.1
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 2.8e-125 452.6 331 64.4
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 4.8e-125 451.8 309 68.6
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 5.3e-124 448.4 340 61.8
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 9.0e-124 447.6 320 68.8
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.8e-122 442.2 330 63.6
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 3.8e-122 442.2 318 67.9
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.9e-122 441.8 330 63.6
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 1.9e-121 439.9 354 61.3
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 3.2e-121 439.1 326 65.6
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 4.2e-121 438.7 320 64.7
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 4.6e-120 435.3 321 63.9
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 6.0e-120 434.9 325 64.0
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 7.9e-120 434.5 348 62.1
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.0e-119 434.1 326 64.4
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 3.9e-119 432.2 324 64.2
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 6.7e-119 431.4 327 63.3
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 6.7e-119 431.4 324 64.2
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.5e-118 430.3 331 64.0
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 7.4e-118 427.9 330 63.3
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 7.4e-118 427.9 335 61.2
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 9.6e-118 427.6 394 53.8
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 2.8e-117 426.0 325 65.2
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 9.0e-116 421.0 342 60.2
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.5e-115 420.2 323 60.4
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 2.6e-115 419.5 294 66.0
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.4e-115 419.1 287 70.4
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 1.9e-113 413.3 325 62.5
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 4.6e-112 408.7 581 41.5
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.0e-111 407.5 288 66.3
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.0e-111 407.5 288 66.3
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 2.3e-111 406.4 335 58.5
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 8.7e-111 404.4 317 60.9
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.7e-111 404.4 324 62.3
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.5e-110 402.9 338 58.3
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 3.7e-109 399.1 253 77.1
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 3.7e-109 399.1 334 58.7
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 8.2e-109 397.9 292 65.1
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 1.2e-104 384.0 328 57.0
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 2.1e-104 383.3 332 56.3
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.6e-104 382.5 265 66.0
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.8e-103 380.2 348 54.3
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 4.8e-101 372.1 354 52.5
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 8.2e-101 371.3 317 60.9
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 5.9e-99 365.2 205 86.3
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 2.1e-96 356.7 297 59.9
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 7.9e-96 354.8 320 54.1
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 1.4e-95 354.0 345 55.1
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.3e-95 353.2 268 59.3
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 3.3e-94 349.4 354 52.3
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 3.3e-94 349.4 271 62.4
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.5e-91 339.3 337 50.7
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 2.6e-86 323.2 274 55.5
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 6.3e-85 318.5 339 46.6
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 1.1e-81 307.8 197 71.6
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.6e-75 287.3 176 76.7
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.9e-73 280.4 196 66.8
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.3e-69 267.7 346 43.1
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.7e-67 260.0 305 47.2
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.5e-67 259.2 205 60.0
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 6.6e-66 255.4 245 50.6
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 8.6e-66 255.0 289 42.6
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.5e-54 215.3 176 57.4
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 9.8e-54 214.9 202 54.0
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 1.3e-53 214.5 256 44.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.7e-53 214.2 139 71.9
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.7e-53 214.2 208 55.8
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 8.3e-53 211.8 278 39.2
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.9e-52 210.7 208 55.3
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.2e-51 208.0 160 61.2
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.3e-45 188.0 286 36.7
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.0e-42 176.8 129 63.6
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 6.4e-37 159.1 163 47.9
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 2.1e-35 154.1 296 36.8
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 6.2e-32 142.5 79 82.3
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 9.9e-30 135.2 126 50.8
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 9.0e-23 112.1 120 48.3
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 8.4e-21 105.5 274 26.6
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 4.2e-20 103.2 181 34.8
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 6.0e-19 99.4 90 55.6
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 6.0e-19 99.4 90 55.6
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 2.8e-16 90.5 57 75.4
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 9.9e-14 82.0 74 54.1
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.9e-13 80.5 112 40.2
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 2.4e-12 77.4 48 77.1
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 5.1e-10 69.7 58 55.2
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.8e-07 61.2 46 58.7


User provided reference genes

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