Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 9.6e-206 719.9 361 100.0
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 8.7e-183 643.7 354 91.8
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 7.4e-182 640.6 354 92.1
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.1e-180 636.7 354 91.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-178 628.2 362 89.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 7.1e-177 624.0 361 88.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.1e-176 622.5 362 88.7
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.3e-175 619.8 362 88.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.8e-175 619.4 362 88.1
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.0e-175 618.6 362 87.8
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.4e-172 609.0 354 87.3
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.2e-170 602.4 354 86.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-164 582.4 366 83.9
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.7e-157 558.5 361 78.9
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 6.5e-154 547.7 394 73.6
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 8.5e-146 520.8 363 78.0
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.5e-142 510.0 352 72.4
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.0e-142 509.6 348 73.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.4e-142 508.4 350 73.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.8e-138 495.4 378 68.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.8e-138 495.4 325 73.2
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 4.2e-137 491.9 352 70.2
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.5e-137 491.5 352 70.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 5.5e-137 491.5 317 75.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.2e-137 491.1 351 69.5
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.2e-136 490.3 319 74.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-136 490.3 353 68.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.7e-136 488.4 317 74.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.0e-136 487.6 322 73.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.8e-135 486.5 317 74.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.8e-135 486.5 319 74.3
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 4.0e-135 485.3 318 73.9
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.2e-135 485.0 353 68.6
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 6.8e-135 484.6 322 73.0
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 8.8e-135 484.2 356 67.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 8.8e-135 484.2 322 73.6
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.6e-134 482.6 394 66.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.4e-134 482.3 352 69.0
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 5.7e-134 481.5 319 73.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 7.5e-134 481.1 335 70.7
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.3e-133 480.3 322 73.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 8.3e-133 477.6 353 66.9
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.4e-132 476.9 322 71.7
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.1e-132 475.7 319 72.7
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.1e-132 475.7 319 72.1
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.1e-132 475.7 321 73.2
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 4.1e-132 475.3 317 73.2
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.1e-132 475.3 354 67.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.1e-132 475.3 334 69.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 7.0e-132 474.6 318 72.6
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.0e-132 474.6 350 68.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 7.0e-132 474.6 318 72.6
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 9.1e-132 474.2 319 72.4
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 9.1e-132 474.2 319 72.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.1e-132 474.2 319 71.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.6e-131 473.4 321 72.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.5e-131 472.2 325 71.4
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.5e-131 471.9 330 70.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.3e-130 470.3 353 67.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.7e-130 469.9 328 69.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-130 469.5 319 71.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.2e-130 469.5 322 71.1
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.9e-130 469.2 324 70.7
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.9e-130 469.2 346 67.9
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.8e-130 468.8 358 67.3
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.8e-130 468.8 319 71.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 5.0e-130 468.4 351 67.2
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.5e-129 466.8 351 66.7
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 2.5e-129 466.1 377 63.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.2e-129 465.7 338 67.8
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.5e-129 464.9 359 65.5
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 7.2e-129 464.5 320 71.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.2e-129 464.5 320 70.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-128 463.8 368 64.4
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.6e-128 463.4 320 70.6
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.6e-128 462.2 304 73.4
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.7e-128 461.8 334 68.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 6.1e-128 461.5 316 72.5
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.0e-127 460.7 364 63.7
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.8e-127 459.9 335 69.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.3e-127 459.5 350 65.7
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.3e-127 459.5 321 70.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.0e-127 459.1 326 69.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 6.8e-127 458.0 319 69.6
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.2e-126 457.2 350 65.7
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.2e-126 457.2 321 70.1
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.2e-126 457.2 353 64.9
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.5e-126 456.8 321 70.7
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.5e-126 456.8 301 74.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.5e-126 456.8 327 70.0
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.5e-126 456.8 328 68.6
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.0e-126 456.4 321 69.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.0e-126 456.4 320 70.6
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.6e-126 456.1 320 69.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 5.7e-126 454.9 373 64.1
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 5.7e-126 454.9 338 65.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.2e-125 453.0 318 70.8
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.8e-125 452.6 324 67.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.7e-125 452.2 361 63.2
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.1e-124 450.7 354 63.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.8e-124 449.9 318 68.6
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.8e-124 449.9 305 71.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.4e-124 449.5 341 65.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.1e-124 449.1 319 69.0
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.6e-123 446.8 357 64.1
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 7.7e-123 444.5 350 64.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.3e-122 443.7 339 66.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.3e-122 443.0 358 62.6
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.8e-122 442.2 327 67.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 6.6e-122 441.4 319 67.4
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.9e-121 439.9 304 69.7
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.9e-121 439.9 319 68.7
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-120 437.2 334 66.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.2e-120 437.2 350 62.9
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.6e-120 435.6 307 69.4
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.3e-119 433.0 381 60.1
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.0e-119 432.2 323 67.2
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 6.8e-119 431.4 344 63.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 6.8e-119 431.4 324 65.1
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.0e-118 429.9 335 65.1
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 9.8e-118 427.6 333 64.9
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.1e-116 422.2 342 63.7
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 9.5e-113 411.0 305 65.6
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.1e-112 409.8 330 63.0
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-109 400.6 260 75.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.2e-107 394.0 520 45.0
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 3.5e-107 392.5 317 61.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 8.1e-104 381.3 266 71.4
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-103 380.9 253 72.3
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 5.8e-102 375.2 267 68.5
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 6.0e-99 365.2 326 58.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 6.4e-93 345.1 316 55.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.9e-92 343.6 336 51.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.5e-89 333.2 276 63.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.3e-89 332.4 223 73.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 5.6e-89 332.0 208 73.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.8e-88 329.7 206 76.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 4.6e-83 312.4 267 61.0
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 5.1e-82 308.9 285 55.1
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 5.1e-82 308.9 199 76.4
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.5e-81 307.4 210 70.0
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 4.0e-79 299.3 207 70.5
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.3e-73 279.3 163 82.2
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.2e-67 261.2 375 42.1
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 7.6e-62 241.9 166 69.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.5e-59 233.0 161 69.6
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.1e-58 229.2 159 71.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.6e-57 224.9 161 72.0
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.8e-56 222.6 208 59.1
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 8.5e-53 211.8 161 62.7
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.2e-48 197.2 325 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 6.3e-48 195.7 256 44.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 7.4e-41 172.2 119 65.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 6.3e-40 169.1 189 50.3
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 4.1e-31 139.8 109 68.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.0e-29 132.9 287 34.8
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 9.4e-28 128.6 262 32.4
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.6e-27 126.7 386 31.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 4.8e-24 116.3 65 83.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.3e-24 115.9 109 48.6
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.4e-23 114.0 128 50.0
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.0e-17 94.4 56 80.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.5e-17 92.4 57 75.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.6e-14 84.7 91 46.2
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.8e-13 80.1 57 70.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.8e-10 71.2 56 58.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.8e-10 71.2 60 60.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.9e-08 63.2 141 32.6


User provided reference genes

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