Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 8.3e-59 230.3 130 100.0
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 2.4e-58 228.8 130 99.2
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 3.1e-58 228.4 130 99.2
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 9.1e-58 226.9 129 99.2
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.2e-57 226.5 130 97.7
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.2e-57 226.5 130 98.5
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.0e-56 223.4 130 97.7
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 3.8e-56 221.5 131 97.7
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 5.0e-56 221.1 130 96.9
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.5e-55 218.8 130 93.8
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 3.6e-54 214.9 130 96.2
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 6.1e-54 214.2 129 96.1
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 3.4e-52 208.4 165 77.0
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 5.7e-52 207.6 122 95.1
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 9.8e-52 206.8 122 95.1
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 4.9e-51 204.5 130 91.5
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 8.3e-51 203.8 121 96.7
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 8.3e-51 203.8 132 91.7
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 4.1e-50 201.4 129 88.4
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 5.4e-50 201.1 129 89.9
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 7.0e-50 200.7 129 89.1
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 7.0e-50 200.7 129 89.1
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.2e-49 199.9 130 86.2
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 87.6
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 4.5e-49 198.0 129 88.4
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.3e-48 196.4 128 87.5
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 1.7e-48 196.1 132 87.9
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 2.3e-48 195.7 129 86.8
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 86.8
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 3.9e-48 194.9 133 86.5
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 8.6e-48 193.7 129 86.0
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 8.6e-48 193.7 129 86.0
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.1e-47 193.4 130 85.4
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 1.5e-47 193.0 132 84.8
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 1.5e-47 193.0 132 85.6
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.5e-47 193.0 132 86.4
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.9e-47 192.6 128 85.9
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 2.5e-47 192.2 129 86.0
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 3.3e-47 191.8 133 85.0
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 4.3e-47 191.4 132 84.1
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.2e-46 189.9 132 83.3
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.2e-46 189.9 132 84.1
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 1.6e-46 189.5 132 84.1
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 2.8e-46 188.7 132 83.3
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 4.7e-46 188.0 128 85.2
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 4.7e-46 188.0 129 84.5
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 8.0e-46 187.2 132 84.1
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 1.0e-45 186.8 132 84.1
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.4e-45 186.4 132 83.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.4e-45 186.4 132 83.3
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.8e-45 186.0 132 83.3
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 2.3e-45 185.7 132 83.3
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 3.1e-45 185.3 132 82.6
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 3.1e-45 185.3 132 83.3
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 3.1e-45 185.3 132 83.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.4e-44 181.8 132 82.6
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 5.8e-44 181.0 132 80.3
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 9.8e-44 180.3 132 80.3
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 9.8e-44 180.3 132 80.3
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.3e-43 179.9 131 82.4
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 2.2e-43 179.1 131 83.2
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.9e-43 177.9 120 85.8
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 8.3e-43 177.2 132 78.8
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.4e-42 176.4 153 72.5
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.9e-42 176.0 129 79.1
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.2e-42 175.3 132 78.8
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 3.2e-42 175.3 129 76.7
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 4.1e-42 174.9 117 86.3
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 4.1e-42 174.9 116 87.9
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 9.2e-42 173.7 132 78.8
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 9.2e-42 173.7 128 77.3
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.6e-41 172.9 132 80.3
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 2.0e-41 172.6 119 85.7
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.7e-41 172.2 130 79.2
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 3.5e-41 171.8 129 76.0
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 6.0e-41 171.0 130 80.0
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 6.0e-41 171.0 133 80.5
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.3e-40 169.9 129 74.4
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.7e-40 169.5 119 83.2
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 5.0e-40 167.9 119 83.2
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 5.0e-40 167.9 162 66.0
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.1e-39 166.8 129 79.1
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.5e-39 166.4 119 83.2
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 2.5e-39 165.6 132 78.0
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 2.5e-39 165.6 119 82.4
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 2.5e-39 165.6 119 84.0
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 7.3e-39 164.1 132 77.3
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 9.5e-39 163.7 129 76.0
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 4.7e-38 161.4 132 75.8
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 1.1e-37 160.2 119 79.8
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.1e-37 160.2 119 80.7
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.5e-36 156.4 95 90.5
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 2.6e-36 155.6 129 76.0
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 2.6e-36 155.6 132 74.2
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 3.4e-36 155.2 103 84.5
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.4e-36 155.2 131 74.8
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.4e-36 155.2 131 74.8
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 4.4e-36 154.8 129 73.6
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 4.4e-36 154.8 129 73.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 5.8e-36 154.5 128 71.1
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 1.7e-35 152.9 86 98.8
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 2.2e-35 152.5 119 79.0
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 2.9e-35 152.1 155 65.2
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.9e-34 149.4 128 71.9
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.2e-33 146.7 115 80.0
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.6e-33 144.8 132 71.2
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.0e-32 143.7 129 69.8
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.0e-32 143.7 119 76.5
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 9.5e-31 137.1 129 67.4
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.2e-30 136.7 131 68.7
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.8e-30 135.6 131 66.4
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 6.2e-30 134.4 119 72.3
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 8.9e-29 130.6 141 60.3
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.2e-28 130.2 104 72.1
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 3.4e-28 128.6 132 65.9
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 7.5e-28 127.5 93 77.4
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 4.9e-27 124.8 116 67.2
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.9e-27 124.8 82 86.6
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 4.9e-27 124.8 129 63.6
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 9.2e-26 120.6 117 65.0
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 3.5e-25 118.6 82 85.4
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.0e-24 117.1 131 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 1.3e-24 116.7 79 79.7
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 6.6e-24 114.4 64 98.4
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 9.5e-23 110.5 82 76.8
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.2e-22 110.2 127 57.5
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 2.4e-21 105.9 68 88.2
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 2.4e-21 105.9 63 92.1
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 7.6e-20 100.9 133 54.9
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.9e-18 96.3 67 79.1
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 4.2e-18 95.1 54 100.0
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 4.2e-18 95.1 114 51.8
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 1.2e-17 93.6 83 62.7
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 1.2e-17 93.6 65 80.0
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.3e-16 90.1 58 84.5
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 3.9e-16 88.6 63 79.4
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 1.1e-15 87.0 273 34.4
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 6.2e-14 81.3 64 71.9
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 1.8e-13 79.7 84 51.2
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 2.0e-12 76.3 51 82.4
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 7.1e-10 67.8 75 64.0
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 7.1e-10 67.8 51 78.4
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 4.6e-09 65.1 113 43.4
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.8e-06 55.8 40 77.5


User provided reference genes

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