Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 0.0e+00 1538.5 867 100.0
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 0.0e+00 1404.4 874 90.3
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 0.0e+00 1379.8 877 88.9
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 0.0e+00 1371.7 877 89.9
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 0.0e+00 1311.2 876 87.0
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 0.0e+00 1310.0 875 87.0
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 0.0e+00 1306.6 790 87.8
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 0.0e+00 1302.7 792 87.4
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 0.0e+00 1300.8 790 87.5
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 0.0e+00 1250.0 877 84.4
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 0.0e+00 1231.1 890 81.9
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 0.0e+00 1118.6 878 74.4
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 0.0e+00 1084.3 891 69.7
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 5.5e-276 954.5 563 89.0
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 2.9e-248 862.4 808 59.4
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.2e-247 859.0 843 56.9
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.2e-246 857.1 840 56.3
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 3.5e-246 855.5 827 57.2
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 1.5e-244 850.1 811 58.3
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 9.5e-244 847.4 834 57.1
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.8e-242 843.2 795 59.4
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 4.0e-242 842.0 827 57.4
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 7.5e-241 837.8 805 57.9
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 1.3e-240 837.0 833 57.5
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 1.9e-239 833.2 815 57.7
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.6e-238 830.1 818 57.6
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 6.0e-238 828.2 833 56.5
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 7.8e-238 827.8 814 58.0
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 1.9e-236 823.2 835 56.0
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 3.3e-236 822.4 823 57.4
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 4.7e-235 818.5 809 56.6
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.4e-234 817.0 780 57.1
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 1.2e-233 813.9 808 55.9
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.2e-232 809.7 804 56.1
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 4.2e-231 805.4 809 55.6
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 2.1e-230 803.1 811 55.4
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 1.0e-229 800.8 794 56.3
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.3e-229 800.4 809 55.5
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.3e-229 800.4 812 55.2
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.7e-229 800.0 805 55.9
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 2.3e-229 799.7 832 54.6
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 8.1e-227 791.2 819 55.1
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 3.1e-226 789.3 839 54.4
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 5.3e-226 788.5 806 54.7
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 6.9e-226 788.1 812 54.7
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 9.0e-226 787.7 854 53.2
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 2.9e-224 782.7 718 58.2
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.1e-223 780.8 829 54.5
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 7.1e-223 778.1 843 53.3
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 1.2e-222 777.3 868 52.5
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 1.6e-222 776.9 804 55.2
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 2.1e-222 776.5 831 53.2
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 3.5e-222 775.8 806 54.1
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 6.6e-221 771.5 822 54.0
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 1.1e-220 770.8 812 55.0
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 1.5e-220 770.4 729 56.8
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 1.5e-220 770.4 795 54.7
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 2.5e-220 769.6 826 54.0
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 5.6e-220 768.5 811 53.4
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 9.6e-220 767.7 824 54.0
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 3.6e-219 765.8 818 54.3
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 1.1e-218 764.2 809 53.2
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 9.0e-218 761.1 738 56.8
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 2.6e-217 759.6 817 52.5
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 4.5e-217 758.8 795 53.7
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 5.8e-217 758.4 801 54.3
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 9.9e-217 757.7 815 53.5
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 3.8e-216 755.7 826 53.1
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.4e-215 753.8 762 55.1
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 9.3e-215 751.1 794 52.8
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 1.6e-214 750.4 792 54.7
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 7.9e-214 748.0 899 49.6
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 3.9e-213 745.7 814 53.4
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.1e-211 740.0 796 52.4
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 5.3e-210 735.3 821 53.0
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 3.4e-209 732.6 789 53.4
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.1e-207 727.6 725 56.3
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.4e-207 727.2 800 52.9
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 1.3e-203 714.1 805 51.9
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 5.8e-201 705.3 820 52.2
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 7.6e-201 704.9 810 50.4
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 7.6e-201 704.9 831 50.3
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 1.7e-200 703.7 720 53.6
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 1.5e-193 680.6 721 53.0
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 3.2e-183 646.4 865 46.5
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.6e-182 644.0 783 49.2
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 9.1e-178 628.2 730 50.1
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 4.4e-172 609.4 611 56.0
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 1.1e-170 604.7 772 46.2
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 2.1e-166 590.5 626 52.2
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 8.8e-165 585.1 794 45.5
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.5e-164 584.3 632 52.8
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.2e-160 570.5 666 48.8
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 4.0e-157 559.7 448 63.4
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 5.6e-151 539.3 815 42.3
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 4.6e-145 519.6 482 59.8
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 4.7e-134 483.0 409 59.9
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 5.8e-132 476.1 813 40.8
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 1.1e-122 445.3 512 50.2
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 1.0e-120 438.7 489 51.1
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 1.2e-118 431.8 413 55.7
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 1.9e-103 381.3 747 36.4
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 1.3e-86 325.5 222 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 9.3e-82 309.3 653 34.6
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 9.3e-82 309.3 919 30.9
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 9.7e-79 299.3 462 41.8
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 7.4e-71 273.1 702 32.8
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 9.7e-71 272.7 316 53.2
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 1.3e-70 272.3 1013 27.6
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 8.2e-70 269.6 221 67.9
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 2.9e-67 261.2 148 87.2
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.0e-59 236.1 284 47.2
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 8.6e-35 153.3 181 53.0
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 4.3e-34 151.0 219 41.1
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 4.1e-21 107.8 132 48.5
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.1e-21 107.8 145 52.4
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 4.1e-21 107.8 63 74.6
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.4e-16 92.8 86 57.0
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 1.4e-16 92.8 730 25.9
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 2.3e-16 92.0 99 54.5
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 1.4e-13 82.8 45 82.2
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 1.4e-13 82.8 45 82.2
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.9e-13 82.4 128 43.8
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 2.8e-09 68.6 38 84.2
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 1.1e-08 66.6 64 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 3.4e-07 61.6 77 45.5


User provided reference genes

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