Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 0.0e+00 1985.3 1066 100.0
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 0.0e+00 1730.7 1074 84.5
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 0.0e+00 1663.3 1079 82.6
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 0.0e+00 1657.9 1079 83.3
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 0.0e+00 1643.2 1076 79.5
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1599.3 1099 76.9
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1590.9 1078 78.1
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 0.0e+00 1587.8 1082 77.7
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 0.0e+00 1554.7 1078 78.5
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 0.0e+00 1406.3 1066 74.6
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 0.0e+00 1373.2 1024 72.9
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 0.0e+00 1172.1 765 83.7
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 8.7e-239 831.2 1185 44.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 4.8e-237 825.5 1132 46.2
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 4.0e-236 822.4 1191 46.5
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.1e-228 796.2 1188 44.8
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.1e-228 796.2 1130 45.7
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 1.5e-227 793.9 1226 42.6
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.3e-226 790.8 1133 44.8
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.4e-220 770.0 1152 43.5
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.2e-219 767.7 1354 41.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.2e-219 767.7 1167 42.8
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.4e-219 766.1 1267 41.1
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.0e-218 764.6 1217 41.4
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 1.8e-215 753.8 1289 40.7
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 3.0e-215 753.1 1289 40.8
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.9e-214 750.4 1279 40.2
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 3.3e-214 749.6 1324 40.6
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.3e-213 747.7 1230 41.8
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 1.3e-213 747.7 1337 39.7
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 1.3e-210 737.6 1294 41.0
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 6.1e-208 728.8 1277 40.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 8.5e-202 708.4 1139 44.1
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 2.6e-198 696.8 1293 39.0
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 4.4e-198 696.0 1207 40.0
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 1.7e-197 694.1 1213 40.6
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 3.7e-197 693.0 1232 38.7
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.7e-192 676.8 1298 40.0
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.7e-189 666.4 1150 40.6
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.3e-186 657.9 1250 38.5
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 8.0e-184 648.7 1325 36.9
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 5.9e-179 632.5 1417 35.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 7.7e-179 632.1 1300 36.0
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.0e-178 631.7 1333 37.7
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 1.0e-178 631.7 1261 37.8
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.3e-178 631.3 1368 34.9
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 1.3e-178 631.3 1337 36.9
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 2.3e-178 630.6 1294 37.2
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.1e-177 628.2 1335 36.3
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 1.2e-176 624.8 1310 37.2
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.0e-175 621.7 1310 37.1
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 2.3e-175 620.5 1333 36.8
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.0e-175 619.8 1376 35.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.2e-174 618.2 1323 36.8
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.0e-174 617.5 1358 35.6
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 2.6e-174 617.1 1338 35.5
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 4.4e-174 616.3 1376 34.2
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 7.5e-174 615.5 1257 36.1
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 7.8e-171 605.5 1042 40.9
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 2.5e-169 600.5 1293 36.7
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 2.5e-169 600.5 1180 38.5
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 2.5e-169 600.5 1293 37.3
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.1e-168 597.4 1297 36.0
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.0e-167 595.1 1073 39.6
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 2.6e-166 590.5 1051 37.0
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 2.6e-166 590.5 1366 35.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 2.9e-165 587.0 1255 36.0
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 6.0e-163 579.3 1360 35.7
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 9.5e-161 572.0 921 40.5
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 6.4e-157 559.3 831 41.9
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 2.5e-153 547.4 1249 32.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 4.3e-153 546.6 1078 36.5
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 7.3e-153 545.8 761 43.1
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 8.1e-152 542.3 1185 35.8
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 3.4e-150 537.0 746 43.2
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.9e-148 531.2 1237 34.2
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 7.1e-148 529.3 1116 35.8
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 7.8e-147 525.8 1227 33.3
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 8.6e-146 522.3 1171 37.2
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.6e-139 501.5 1232 34.0
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 7.8e-139 499.2 1213 33.6
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 3.0e-138 497.3 1230 33.5
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.2e-136 491.9 1370 31.1
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 2.2e-133 481.1 1215 33.0
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.9e-133 480.7 1263 32.8
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.3e-130 471.1 1070 32.4
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 5.3e-127 459.9 1015 32.9
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.6e-126 457.6 820 37.0
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.0e-86 325.1 542 38.6
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.1e-79 302.8 827 28.9
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.1e-76 292.7 1037 26.3
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 5.7e-73 280.4 477 42.3
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 2.2e-72 278.5 772 32.4
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.4e-66 259.2 620 33.2
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 4.4e-65 254.2 304 52.3
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 8.0e-59 233.4 291 45.7
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.4e-55 222.6 346 40.2
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.4e-50 206.1 264 50.8
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 3.4e-49 201.4 275 41.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 7.5e-49 200.3 149 61.1
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.3e-48 199.5 365 36.2
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.4e-47 195.3 673 30.8
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.3e-45 189.5 165 65.5
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.2e-43 183.0 331 44.4
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 1.3e-40 172.9 88 92.0
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.5e-38 164.9 679 25.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 6.6e-37 160.6 100 70.0
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.2e-35 156.4 145 50.3
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.6e-35 154.8 423 29.8
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 2.2e-32 145.6 142 49.3
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 5.4e-31 141.0 203 39.9
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.0e-30 137.5 84 82.1
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.6e-28 131.0 624 23.9
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 1.2e-27 129.8 186 50.0
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.2e-27 129.8 145 46.2
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.2e-27 129.8 208 38.0
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 4.8e-19 101.3 92 63.0
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.4e-17 95.1 131 40.5
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 6.0e-14 84.3 210 31.4
AL4G14240 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 1.3e-13 83.2 81 59.3
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.3e-13 83.2 213 30.0
AL5G19250 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 5.1e-13 81.3 81 59.3
AL2G19550 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 3.3e-12 78.6 148 40.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 7.3e-12 77.4 61 55.7
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.1e-11 75.9 77 42.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 4.8e-11 74.7 77 41.6
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.1e-10 73.6 146 32.9
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.4e-09 68.6 54 55.6
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 7.1e-07 60.8 74 36.5
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.6e-06 59.7 112 42.9


User provided reference genes

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