Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 7.4e-189 663.7 330 100.0
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.2e-165 586.6 331 89.1
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 2.0e-165 585.9 330 89.4
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 3.8e-161 571.6 330 88.8
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.2e-160 568.2 331 85.8
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.2e-160 568.2 331 85.8
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.2e-160 568.2 331 85.8
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.2e-160 568.2 331 85.8
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 4.2e-160 568.2 331 86.4
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 9.5e-160 567.0 331 85.5
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 6.8e-158 560.8 331 84.3
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 7.5e-157 557.4 363 80.4
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 3.7e-156 555.1 365 80.0
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 1.4e-155 553.1 365 80.0
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.3e-137 493.4 347 74.1
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 2.2e-132 476.1 332 74.1
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 2.6e-117 426.0 302 69.2
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 5.4e-115 418.3 305 67.5
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 1.6e-114 416.8 302 66.6
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.7e-113 413.3 328 64.6
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.3e-113 412.9 307 65.8
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 6.6e-113 411.4 302 65.9
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 3.3e-112 409.1 303 65.0
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.3e-112 409.1 307 66.8
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 3.3e-112 409.1 305 65.2
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 9.6e-112 407.5 302 63.6
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 3.6e-111 405.6 308 64.6
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.1e-111 404.4 340 62.4
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 1.4e-110 403.7 306 62.7
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.8e-110 403.3 309 63.8
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.8e-110 403.3 294 67.0
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.8e-110 403.3 340 62.1
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 3.1e-110 402.5 304 65.1
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 4.0e-110 402.1 308 64.0
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 5.3e-110 401.7 306 64.4
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 9.0e-110 401.0 286 65.7
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.9e-109 397.5 310 62.6
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.9e-109 397.5 310 62.6
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.3e-108 397.1 314 63.4
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.2e-108 396.4 318 63.8
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 2.9e-108 396.0 307 63.8
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.9e-108 396.0 307 62.2
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.8e-108 395.6 310 62.3
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.9e-108 395.2 302 63.2
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 6.4e-108 394.8 305 62.0
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.9e-107 393.3 311 64.0
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 9.3e-107 391.0 305 61.6
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.6e-106 390.2 309 60.2
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 6.0e-106 388.3 315 60.6
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 6.0e-106 388.3 308 62.7
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 7.9e-106 387.9 309 59.9
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.3e-105 387.1 335 58.5
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 3.9e-105 385.6 309 60.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 6.7e-105 384.8 305 62.6
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.5e-104 383.6 318 58.8
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.9e-104 383.3 308 59.4
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 9.6e-104 380.9 308 58.8
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 2.8e-103 379.4 302 61.6
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.1e-102 377.5 302 60.6
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.4e-102 377.1 302 61.3
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.1e-102 375.9 289 63.0
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 6.9e-102 374.8 295 62.7
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 5.8e-101 371.7 304 58.6
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.3e-100 370.5 300 58.3
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.3e-100 370.5 308 57.8
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.4e-99 367.1 300 57.3
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 2.5e-99 366.3 303 59.1
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 4.2e-99 365.5 315 58.7
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 9.3e-99 364.4 299 59.9
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.3e-96 355.9 298 56.7
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 3.7e-95 352.4 304 56.9
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 7.6e-93 344.7 288 58.7
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.3e-92 344.0 315 54.9
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.3e-92 344.0 292 56.8
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.2e-92 343.2 288 58.0
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.9e-92 342.8 389 48.3
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.1e-91 340.9 290 57.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.6e-90 337.0 334 53.0
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 5.7e-88 328.6 301 54.2
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 9.0e-86 321.2 320 53.4
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 9.0e-86 321.2 311 53.1
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 2.2e-84 316.6 284 54.9
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 5.0e-84 315.5 265 60.4
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 4.6e-82 308.9 297 52.9
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 9.7e-80 301.2 244 59.8
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 9.7e-80 301.2 286 52.1
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.4e-78 297.4 246 61.4
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 9.1e-78 294.7 276 56.2
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 4.5e-77 292.4 207 66.7
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.1e-75 287.7 279 55.2
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.4e-75 287.3 220 62.7
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 6.1e-74 282.0 276 51.8
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.4e-65 254.2 329 47.1
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.1e-64 251.1 296 46.6
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 5.7e-64 248.8 205 56.6
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 9.7e-64 248.1 247 50.2
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.4e-62 244.2 234 53.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 3.1e-62 243.0 231 51.9
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.6e-58 230.7 258 48.4
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.6e-56 223.4 196 57.7
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.6e-56 223.4 211 55.5
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-55 221.1 210 54.8
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.2e-55 220.3 181 59.7
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.2e-55 220.3 193 57.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.8e-55 219.9 188 58.0
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.8e-55 219.2 210 54.8
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.4e-54 217.6 192 56.8
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.3e-49 200.3 157 61.1
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.7e-48 195.7 187 53.5
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 4.9e-47 192.6 300 40.0
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.1e-46 188.3 153 60.1
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.5e-43 180.3 282 39.4
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 4.2e-43 179.5 141 70.9
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.0e-41 174.9 202 48.0
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.8e-40 168.3 105 71.4
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.3e-39 167.9 105 71.4
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.6e-37 159.5 105 64.8
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.2e-34 151.4 219 42.0
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.2e-34 151.4 188 45.2
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.0e-32 144.1 108 66.7
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.0e-32 144.1 102 66.7
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.1e-30 136.3 123 57.7
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 5.4e-30 136.0 265 34.3
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.0e-29 134.0 120 58.3
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 9.5e-27 125.2 288 33.0
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.6e-24 117.1 101 58.4
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.5e-19 101.3 77 63.6
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.5e-19 101.3 77 63.6
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 9.5e-19 98.6 62 67.7
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 2.4e-09 67.4 45 64.4
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.4e-07 58.9 39 71.8


User provided reference genes

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