Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 4.1e-234 814.3 396 100.0
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 3.2e-178 628.6 388 80.2
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 5.4e-178 627.9 390 80.0
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.3e-176 622.5 379 81.0
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 3.0e-176 622.1 379 81.0
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 1.1e-175 620.2 388 79.4
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 5.6e-175 617.8 380 80.5
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 5.6e-175 617.8 380 80.5
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 2.6e-164 582.4 384 75.0
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 3.5e-161 572.0 390 73.1
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 3.9e-160 568.5 382 74.6
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 1.5e-159 566.6 391 72.6
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 5.5e-138 495.0 389 64.8
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 7.7e-124 448.0 383 60.8
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 7.0e-85 318.5 382 45.3
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.3e-82 309.7 370 44.3
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 3.6e-81 306.2 382 44.8
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 4.7e-81 305.8 389 44.5
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.4e-80 304.3 384 43.2
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 4.0e-80 302.8 372 44.1
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 4.0e-80 302.8 381 44.1
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.2e-79 301.2 372 43.5
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 7.5e-79 298.5 377 44.0
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.7e-78 296.2 394 40.9
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.4e-78 295.4 383 42.6
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.4e-77 294.3 375 43.5
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.4e-77 294.3 375 44.8
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.9e-77 293.9 371 44.7
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.4e-77 293.5 370 43.8
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 7.8e-76 288.5 351 46.2
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.0e-75 288.1 384 41.7
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.0e-75 288.1 383 43.1
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.7e-75 287.3 370 43.0
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.0e-75 286.6 383 41.8
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.0e-75 286.6 376 43.1
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 5.1e-75 285.8 374 45.2
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 8.6e-75 285.0 368 43.2
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.6e-75 285.0 383 41.3
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 8.6e-75 285.0 373 41.6
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 1.1e-74 284.6 383 43.9
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.5e-74 284.3 382 40.8
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.3e-74 283.1 373 42.1
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 4.3e-74 282.7 373 41.3
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 7.3e-74 282.0 371 41.0
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.2e-73 281.2 370 41.6
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.2e-73 281.2 373 42.1
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.2e-73 281.2 374 41.4
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.1e-73 280.4 395 40.3
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 6.2e-73 278.9 369 42.0
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.1e-73 278.5 371 41.8
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 1.1e-72 278.1 368 44.6
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.4e-72 277.7 386 43.3
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 2.3e-72 276.9 372 41.7
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 4.0e-72 276.2 375 42.4
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 6.8e-72 275.4 382 40.8
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 8.9e-72 275.0 377 42.7
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.2e-71 274.6 380 41.3
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.5e-71 274.2 380 41.3
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.6e-71 273.5 373 40.2
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 4.4e-71 272.7 380 41.8
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 5.8e-71 272.3 383 40.2
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 5.8e-71 272.3 371 41.8
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 9.9e-71 271.6 385 41.6
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.3e-70 271.2 370 41.6
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.2e-70 270.4 376 39.1
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.9e-70 270.0 373 43.2
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 2.9e-70 270.0 373 42.1
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 3.7e-70 269.6 374 39.6
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 4.9e-70 269.2 384 40.9
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 6.4e-70 268.9 384 39.8
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 8.3e-70 268.5 385 42.3
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.4e-69 267.7 366 42.1
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 3.2e-69 266.5 373 41.0
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 2.7e-68 263.5 375 42.1
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 6.0e-68 262.3 380 40.3
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.7e-67 260.8 400 39.2
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.1e-66 258.1 375 38.1
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.1e-66 258.1 373 40.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.1e-66 258.1 379 42.5
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.9e-66 257.3 374 40.6
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.5e-66 256.9 378 39.4
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 5.6e-66 255.8 371 38.0
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.3e-66 255.4 316 44.3
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.2e-65 254.6 383 39.4
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 3.6e-65 253.1 390 39.2
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 4.7e-65 252.7 372 39.2
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-64 250.4 371 38.5
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-64 250.4 371 38.5
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-64 250.4 372 39.8
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 3.1e-64 250.0 391 38.9
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 5.2e-64 249.2 384 38.5
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 8.9e-64 248.4 399 38.8
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.5e-63 247.7 391 38.9
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 4.4e-63 246.1 373 37.3
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 4.4e-63 246.1 386 39.1
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.9e-63 245.0 375 39.2
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 1.3e-62 244.6 373 38.6
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.7e-62 244.2 389 38.8
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.7e-62 244.2 375 39.5
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 2.2e-62 243.8 373 37.3
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 8.4e-62 241.9 366 38.3
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.4e-61 241.1 379 36.9
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.9e-61 240.7 377 40.3
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 2.4e-61 240.4 372 36.8
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 3.5e-60 236.5 366 38.5
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.0e-59 235.0 367 37.3
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 3.0e-59 233.4 384 35.9
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.7e-59 231.9 373 38.6
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 7.3e-58 228.8 377 35.5
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.6e-57 227.6 373 37.5
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 4.0e-56 223.0 271 43.5
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.0e-55 220.7 388 37.6
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 4.4e-55 219.5 280 41.4
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.4e-55 219.5 228 48.2
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 4.4e-55 219.5 254 47.2
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 9.9e-55 218.4 376 37.2
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 2.2e-54 217.2 378 34.4
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 6.4e-54 215.7 380 33.7
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.4e-53 214.5 338 36.7
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 4.2e-53 213.0 373 34.6
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 2.1e-52 210.7 281 40.6
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.0e-51 206.8 374 33.7
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 1.9e-50 204.1 341 35.2
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 5.6e-50 202.6 373 34.3
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 2.8e-49 200.3 367 37.6
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 3.1e-48 196.8 270 39.6
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.9e-45 187.6 185 49.2
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.2e-44 184.9 296 38.9
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 6.2e-41 172.6 220 40.9
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 5.3e-40 169.5 331 32.0
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 5.3e-40 169.5 181 48.1
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 7.1e-37 159.1 230 36.5
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 6.7e-35 152.5 210 41.0
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.2e-29 133.7 395 28.9
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.5e-26 124.0 206 36.4
Lj1C83T5 Lonicera japonica HOM05D007853 ORTHO05D009873 3.1e-24 117.1 386 28.5
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 6.9e-24 115.9 379 28.5
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 1.2e-23 115.2 219 34.7
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 1.5e-23 114.8 356 27.8
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 7.7e-23 112.5 263 30.8
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 1.7e-22 111.3 382 28.8
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 6.5e-22 109.4 376 26.3
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 1.1e-21 108.6 373 27.6
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.9e-21 107.8 390 28.5
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 2.5e-21 107.5 381 27.6
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 2.5e-21 107.5 381 27.6
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.2e-21 105.9 343 28.3
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 1.2e-20 105.1 375 28.0
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 2.7e-20 104.0 392 27.0
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 7.9e-20 102.4 387 26.9
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.4e-19 101.7 394 28.9
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 1.4e-19 101.7 385 26.8
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 5.1e-19 99.8 200 33.0
QL09p044713 Quercus lobata HOM05D007853 ORTHO05D009873 5.1e-19 99.8 397 27.7
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.1e-18 98.6 377 26.8
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.1e-18 98.6 377 26.8
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 2.0e-18 97.8 398 25.9
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 5.7e-18 96.3 392 26.0
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 7.4e-18 95.9 386 25.9
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 7.4e-18 95.9 157 35.0
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 1.1e-16 92.0 387 25.6
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.4e-16 91.7 122 42.6
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.6e-15 87.4 360 24.2
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.7e-15 85.9 269 29.4
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.3e-14 85.1 138 34.1
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 3.3e-10 70.5 80 46.2
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.7e-09 68.2 96 38.5
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 1.2e-07 62.0 106 35.8
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.0e-07 61.2 80 42.5
SEGI_31464 Sequoiadendron giganteum HOM05D004907 ORTHO05D005707 5.0e-06 56.6 81 39.5


User provided reference genes

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