Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 2.9e-160 568.5 296 100.0
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 2.0e-148 529.3 296 93.2
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 4.4e-148 528.1 296 93.2
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 2.5e-143 512.3 296 90.5
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 4.2e-143 511.5 296 91.9
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.1e-142 509.2 298 91.3
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 2.7e-142 508.8 298 91.6
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 4.7e-142 508.1 298 91.3
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.0e-141 506.9 298 90.9
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.0e-141 505.4 297 90.9
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.2e-139 499.2 321 83.8
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.2e-136 489.2 304 88.2
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.6e-134 483.0 303 86.1
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 5.4e-122 441.4 245 94.3
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.0e-117 427.2 304 78.6
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 3.6e-110 402.1 297 76.4
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.8e-109 399.8 212 97.2
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.2e-108 397.1 214 95.8
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 4.4e-108 395.2 302 75.8
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 2.0e-100 369.8 337 63.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 9.2e-98 360.9 267 73.8
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.5e-97 359.0 330 63.0
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 4.6e-97 358.6 340 64.4
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.3e-96 357.1 341 62.8
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.9e-95 353.2 267 73.0
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.9e-95 353.2 267 73.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.2e-94 350.5 262 74.4
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.1e-93 347.4 328 61.9
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.4e-93 347.1 231 81.0
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.4e-93 346.3 231 81.0
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 6.9e-93 344.7 231 80.5
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 8.9e-93 344.4 282 68.4
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.2e-92 344.0 222 80.2
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.5e-92 343.6 333 60.7
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 2.6e-92 342.8 206 85.9
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.4e-92 342.4 281 66.9
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 5.8e-92 341.7 303 63.4
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.7e-91 340.1 222 79.3
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.2e-91 339.7 236 79.2
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.9e-91 339.3 264 70.5
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.9e-91 339.3 264 70.5
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 2.9e-91 339.3 206 81.6
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 4.9e-91 338.6 222 80.2
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 6.4e-91 338.2 266 69.5
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 8.4e-91 337.8 220 80.9
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 8.4e-91 337.8 315 63.5
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.4e-90 337.0 272 69.9
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.9e-90 336.7 250 74.8
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.4e-90 336.3 285 67.0
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.4e-90 336.3 287 66.6
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.2e-90 335.9 269 67.3
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 3.2e-90 335.9 225 78.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.2e-90 335.5 230 78.3
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 7.1e-90 334.7 253 71.1
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.6e-89 333.6 220 79.1
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.1e-89 333.2 304 64.8
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 2.1e-89 333.2 270 69.3
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 4.6e-89 332.0 222 80.2
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 6.0e-89 331.6 222 76.6
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 7.8e-89 331.3 268 67.2
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.0e-88 330.9 313 63.3
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 1.3e-88 330.5 250 70.8
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.7e-88 330.1 212 80.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.7e-88 330.1 222 79.3
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 3.0e-88 329.3 256 72.3
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 3.9e-88 328.9 268 66.8
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.1e-88 328.6 294 63.3
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 5.1e-88 328.6 221 78.7
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 5.1e-88 328.6 268 66.8
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 6.6e-88 328.2 221 78.3
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 8.7e-88 327.8 234 76.1
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.1e-87 327.4 206 80.1
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.1e-87 327.4 221 78.3
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.5e-87 327.0 220 78.6
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.9e-87 326.6 285 64.2
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.9e-87 326.6 260 68.8
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 2.5e-87 326.2 229 76.9
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 4.3e-87 325.5 204 80.4
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 9.6e-87 324.3 221 76.9
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.3e-86 323.9 221 76.9
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 1.3e-86 323.9 209 80.4
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.3e-86 323.9 221 77.4
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.6e-86 323.6 222 76.1
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.6e-86 323.6 209 78.0
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.1e-86 323.2 206 81.6
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.1e-86 323.2 261 68.2
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 2.8e-86 322.8 222 76.6
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 2.8e-86 322.8 206 81.1
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 3.6e-86 322.4 313 62.9
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.6e-86 322.4 221 77.4
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.8e-86 322.0 398 52.0
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 8.1e-86 321.2 206 81.1
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.1e-85 320.9 220 76.4
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 9.0e-85 317.8 222 74.3
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 9.0e-85 317.8 238 71.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.5e-84 317.0 290 62.8
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.0e-84 316.6 193 82.9
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 8.4e-83 311.2 240 70.4
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 5.4e-82 308.5 237 70.5
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 9.3e-82 307.8 206 78.2
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 2.1e-81 306.6 206 76.7
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 2.7e-81 306.2 204 75.5
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.0e-80 304.3 183 83.6
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 2.8e-78 296.2 289 59.5
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 5.3e-77 292.0 300 58.3
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.6e-70 270.4 267 59.2
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 2.1e-70 270.0 223 66.4
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 5.3e-69 265.4 206 70.9
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 4.5e-68 262.3 211 64.9
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 2.1e-62 243.4 211 59.7
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 6.9e-61 238.4 222 55.9
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 3.8e-59 232.6 144 79.2
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.1e-50 204.5 162 61.7
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.2e-49 201.1 239 49.0
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 3.6e-49 199.5 208 51.4
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 5.7e-47 192.2 230 46.5
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 9.7e-47 191.4 178 53.4
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 4.5e-44 182.6 177 52.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.0e-40 171.4 173 58.4
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.8e-37 160.6 144 62.5
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 5.2e-32 142.5 159 54.1
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 2.3e-24 117.1 149 38.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 2.8e-22 110.2 65 83.1
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 8.0e-17 92.0 76 68.4
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.3e-16 90.5 53 84.9
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 1.7e-14 84.3 49 89.8


User provided reference genes

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