Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.2e-64 249.6 120 100.0
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 2.3e-63 245.4 120 96.7
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 2.3e-63 245.4 120 96.7
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 2.3e-63 245.4 120 96.7
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 2.3e-63 245.4 120 96.7
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 5.1e-63 244.2 120 95.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 5.1e-63 244.2 120 95.8
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 5.3e-60 234.2 120 94.2
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 6.9e-60 233.8 120 92.5
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.5e-59 232.6 120 93.3
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 3.4e-59 231.5 120 91.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 3.4e-59 231.5 120 90.0
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.0e-58 229.9 120 90.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.0e-58 229.9 120 90.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 2.2e-58 228.8 120 90.0
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.9e-58 228.4 120 90.8
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 2.9e-58 228.4 120 90.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 2.9e-58 228.4 120 89.2
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.5e-56 221.5 120 87.5
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.0e-55 218.4 120 85.8
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.4e-52 209.5 121 83.5
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-50 203.0 121 81.8
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.2e-50 202.2 121 81.8
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.0e-50 201.1 121 81.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.3e-42 176.4 121 70.2
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 3.5e-35 151.8 120 60.8
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 5.9e-35 151.0 120 60.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.5e-34 147.1 120 59.2
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.4e-33 146.4 122 60.7
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 7.2e-33 144.1 120 59.2
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 7.2e-33 144.1 117 59.8
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 4.7e-32 141.4 112 58.9
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.0e-31 140.2 117 59.0
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 5.2e-31 137.9 121 59.5
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 8.8e-31 137.1 121 55.4
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 52.5
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 55.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 7.4e-30 134.0 115 56.5
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 7.4e-30 134.0 120 55.8
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 7.4e-30 134.0 122 56.6
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 9.7e-30 133.7 112 57.1
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 51.7
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 54.2
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 51.7
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 56.7
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.8e-29 131.3 120 55.8
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 4.8e-29 131.3 120 54.2
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.8e-29 131.3 121 55.4
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 6.3e-29 131.0 118 49.2
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 8.2e-29 130.6 110 54.5
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 55.0
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.4e-28 129.0 121 55.4
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 3.1e-28 128.6 121 51.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 5.3e-28 127.9 114 51.8
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 9.1e-28 127.1 68 88.2
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 52.5
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.2e-27 126.7 124 52.4
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.6e-27 126.3 120 52.5
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 4.5e-27 124.8 119 51.3
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.5e-27 124.8 122 49.2
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 50.8
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 51.7
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.7e-26 122.9 117 51.3
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.2e-26 122.5 122 54.1
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.2e-26 122.5 122 54.1
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 2.2e-26 122.5 122 54.1
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 2.9e-26 122.1 120 51.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.9e-26 122.1 123 52.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.8e-26 121.7 121 47.9
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.8e-26 121.7 120 50.8
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 5.0e-26 121.3 114 51.8
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.0e-26 121.3 116 51.7
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 6.5e-26 120.9 119 50.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.5e-26 120.9 116 51.7
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 8.5e-26 120.6 123 49.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 8.5e-26 120.6 123 49.6
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.1e-25 120.2 121 48.8
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.1e-25 120.2 116 50.0
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.5e-25 119.8 119 48.7
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 2.5e-25 119.0 122 48.4
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 4.2e-25 118.2 116 49.1
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 4.2e-25 118.2 118 48.3
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.6e-24 116.3 120 50.0
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.6e-24 116.3 120 50.0
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 2.1e-24 115.9 119 45.4
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 2.1e-24 115.9 124 53.2
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.6e-24 115.2 124 53.2
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 4.7e-24 114.8 124 47.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.0e-23 113.6 113 46.9
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.3e-23 112.5 116 50.9
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 6.7e-23 110.9 62 83.9
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 6.7e-23 110.9 90 67.8
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.2e-22 110.2 124 45.2
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.6e-22 109.0 111 48.6
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 3.3e-22 108.6 117 46.2
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 5.7e-22 107.8 124 43.5
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 3.7e-21 105.1 107 51.4
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.4e-20 103.2 118 42.4
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.4e-20 103.2 113 47.8
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 4.1e-20 101.7 121 48.8
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 9.1e-20 100.5 102 51.0
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.0e-18 97.1 115 41.7
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 1.3e-18 96.7 99 47.5
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 3.8e-18 95.1 96 47.9
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 5.0e-18 94.7 108 42.6
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 6.5e-18 94.4 118 40.7
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.1e-17 93.6 123 39.0
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.2e-17 92.0 119 43.7
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.0e-15 85.1 53 75.5
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 7.5e-14 80.9 66 56.1
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 9.8e-14 80.5 150 31.3
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.3e-13 80.1 60 53.3
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 6.3e-13 77.8 87 41.4
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.1e-12 77.0 85 50.6
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.4e-12 75.9 87 39.1
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.4e-12 75.9 122 35.2
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.6e-11 73.2 74 50.0
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.0e-11 72.8 108 38.0
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.9e-11 71.2 67 53.7
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 1.7e-10 69.7 101 41.6
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.0e-10 68.2 75 46.7
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.0e-10 68.2 69 55.1
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 6.6e-10 67.8 101 40.6
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.6e-10 67.4 53 54.7
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.5e-09 66.6 71 50.7
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.5e-09 65.9 48 60.4
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 3.3e-09 65.5 76 42.1
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 7.2e-09 64.3 127 31.5
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 3.6e-08 62.0 54 51.9
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.0e-07 58.9 72 41.7
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 4.0e-07 58.5 40 65.0
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 6.8e-07 57.8 39 59.0
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 4.4e-06 55.1 113 32.7
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 5.7e-06 54.7 114 30.7
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 7.5e-06 54.3 114 29.8
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 9.8e-06 53.9 87 37.9


User provided reference genes

Program Settings