Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 1.9e-195 685.6 350 100.0
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.3e-180 635.6 351 93.7
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.9e-179 632.5 351 93.4
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 2.5e-179 632.1 351 94.6
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 2.5e-179 632.1 351 94.6
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 5.7e-179 630.9 351 94.3
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 9.7e-179 630.2 354 93.8
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 6.3e-178 627.5 353 92.4
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 4.1e-177 624.8 355 93.2
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 4.1e-177 624.8 351 92.9
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 2.6e-176 622.1 355 93.2
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 1.0e-172 610.1 355 91.0
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 2.3e-172 609.0 354 92.1
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 3.9e-172 608.2 351 91.2
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 4.1e-161 571.6 351 84.6
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 9.1e-161 570.5 350 83.4
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 5.0e-151 538.1 355 82.8
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.7e-135 486.5 300 81.3
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 7.2e-134 481.1 317 77.0
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 7.2e-134 481.1 351 71.8
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 6.1e-133 478.0 351 70.1
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 1.0e-132 477.2 296 81.4
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.8e-132 476.5 351 70.4
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 3.0e-132 475.7 305 79.3
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 6.8e-132 474.6 301 80.4
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 8.9e-132 474.2 312 77.9
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 4.4e-131 471.9 317 76.0
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 5.7e-131 471.5 314 75.5
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 7.5e-131 471.1 308 78.9
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.3e-130 470.3 305 79.3
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 2.8e-130 469.2 325 74.8
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 4.9e-130 468.4 297 77.8
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 4.9e-130 468.4 297 77.8
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 8.3e-130 467.6 353 70.0
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 1.1e-129 467.2 340 72.4
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.4e-129 466.1 317 74.8
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 2.4e-129 466.1 317 74.1
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 3.1e-129 465.7 305 79.3
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 4.1e-129 465.3 301 79.1
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 5.4e-129 464.9 314 74.5
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 7.0e-129 464.5 317 74.8
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 9.2e-129 464.2 302 77.8
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.2e-128 463.8 289 81.3
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 3.5e-128 462.2 317 75.7
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 5.9e-128 461.5 307 77.2
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.8e-128 461.1 317 73.8
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 7.8e-128 461.1 319 74.6
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 7.8e-128 461.1 324 73.8
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 1.0e-127 460.7 291 80.1
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 1.0e-127 460.7 321 73.5
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 3.8e-127 458.8 301 76.1
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 3.8e-127 458.8 301 76.1
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 5.0e-127 458.4 301 75.7
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 5.0e-127 458.4 317 73.2
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 6.6e-127 458.0 337 69.1
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 8.6e-127 457.6 301 76.1
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.1e-126 457.2 301 78.4
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 1.9e-126 456.4 301 75.4
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 2.5e-126 456.1 299 76.9
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 2.5e-126 456.1 351 68.1
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 4.3e-126 455.3 346 67.3
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 4.3e-126 455.3 371 65.5
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 7.3e-126 454.5 315 74.6
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.2e-125 453.8 298 76.2
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.6e-125 453.4 291 78.4
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.1e-125 453.0 299 76.9
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 3.6e-125 452.2 297 76.4
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 4.7e-125 451.8 350 67.1
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.0e-124 450.7 302 75.2
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 3.0e-124 449.1 296 76.4
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.9e-122 442.6 301 76.4
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 6.4e-122 441.4 312 73.7
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 8.3e-122 441.0 316 71.5
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 9.2e-121 437.6 298 74.2
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.1e-118 430.6 293 75.4
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 2.1e-117 426.4 295 74.9
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 2.1e-117 426.4 304 72.0
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 4.7e-117 425.2 287 76.3
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.2e-116 421.8 351 65.8
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 6.8e-116 421.4 349 62.2
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.0e-115 419.9 298 73.2
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 3.4e-115 419.1 301 72.1
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.3e-114 417.2 298 72.5
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.2e-114 416.4 287 74.2
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 3.7e-114 415.6 299 69.6
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 5.4e-113 411.8 298 72.1
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 7.0e-113 411.4 354 62.4
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 9.2e-113 411.0 298 71.5
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 2.1e-112 409.8 242 86.0
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.0e-111 407.5 296 71.3
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 1.0e-111 407.5 291 71.8
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 6.6e-111 404.8 322 66.1
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 6.6e-111 404.8 269 77.0
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 4.3e-110 402.1 298 68.8
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.3e-110 402.1 314 65.6
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.3e-110 401.4 314 65.3
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 7.3e-110 401.4 314 65.3
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 9.5e-110 401.0 351 62.7
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 9.5e-110 401.0 314 65.3
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 3.6e-109 399.1 298 69.1
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.4e-108 397.1 293 70.3
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.3e-108 396.4 314 65.3
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 5.2e-108 395.2 300 68.0
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 1.2e-107 394.0 297 68.0
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 1.5e-107 393.7 300 67.7
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 2.6e-107 392.9 291 70.1
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.4e-105 387.1 308 67.5
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 7.1e-105 384.8 255 75.3
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.2e-104 384.0 288 68.1
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 2.1e-104 383.3 353 58.1
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 3.0e-103 379.4 258 72.9
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 2.5e-102 376.3 281 68.3
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.2e-101 374.0 257 72.4
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 1.6e-101 373.6 255 72.2
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 4.0e-100 369.0 255 71.4
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 1.2e-99 367.5 311 65.0
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.5e-99 367.1 314 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 5.4e-97 358.6 245 75.9
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.2e-91 340.9 282 65.2
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 9.3e-89 331.3 288 59.4
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 9.6e-86 321.2 255 63.1
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 4.9e-82 308.9 268 63.1
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 3.2e-81 306.2 177 88.1
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 7.6e-75 285.0 287 53.0
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.7e-66 257.3 191 72.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 5.5e-65 252.3 289 53.3
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 7.9e-64 248.4 176 69.9
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.0e-51 207.2 146 71.2
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 2.6e-46 190.3 128 78.1
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.4e-41 174.5 114 71.1
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.6e-40 171.0 103 86.4
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 5.3e-36 156.0 103 75.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 5.3e-36 156.0 103 75.7
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-25 121.7 63 100.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.1e-20 103.6 60 88.3
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.2e-19 101.7 192 31.8
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.3e-09 67.0 45 60.0


User provided reference genes

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