Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.9e-257 891.3 435 100.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 4.2e-224 781.2 403 95.5
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 9.4e-224 780.0 443 87.8
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-223 779.2 443 86.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-223 779.2 443 87.1
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-223 779.2 443 86.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.6e-223 779.2 443 87.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 2.1e-223 778.9 443 86.7
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.4e-222 776.2 403 95.0
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.4e-222 776.2 443 86.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 2.0e-221 772.3 443 86.2
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 2.6e-221 771.9 403 94.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 4.4e-221 771.2 443 86.0
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 9.4e-216 753.4 443 84.7
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.4e-197 691.4 449 77.1
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.8e-183 645.6 409 79.5
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.7e-180 636.3 410 78.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.5e-122 442.6 430 53.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 3.9e-121 439.1 432 54.2
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.9e-121 439.1 235 93.2
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 3.9e-121 439.1 428 54.2
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 2.5e-120 436.4 432 52.5
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.3e-120 436.0 427 53.6
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.8e-119 433.0 428 52.3
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.8e-119 432.2 442 51.8
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 4.1e-118 429.1 428 50.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 5.3e-118 428.7 428 50.9
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 9.0e-118 427.9 432 53.9
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 7.7e-117 424.9 423 53.2
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.3e-116 424.1 430 52.8
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 5.0e-116 422.2 429 52.7
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 6.5e-116 421.8 411 57.2
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 8.5e-116 421.4 439 49.9
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.1e-115 421.0 425 51.5
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 4.6e-114 415.6 426 52.6
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 6.1e-114 415.2 433 52.0
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.3e-113 413.3 431 50.8
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.0e-113 412.9 422 50.2
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 3.9e-113 412.5 428 51.2
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 5.1e-113 412.1 429 50.6
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.0e-112 410.2 321 62.6
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 2.0e-112 410.2 429 51.7
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 2.0e-112 410.2 438 52.3
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 2.0e-112 410.2 432 49.5
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.3e-111 407.5 428 50.7
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 3.7e-111 406.0 431 50.1
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.7e-111 406.0 413 52.8
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 4.8e-111 405.6 430 51.9
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.3e-111 405.2 435 51.7
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.0e-109 400.2 423 50.1
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.0e-109 400.2 434 50.0
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.3e-108 397.5 433 49.9
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.4e-107 394.0 358 56.4
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.5e-107 393.3 423 49.4
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 3.2e-107 392.9 439 48.3
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.2e-107 391.7 416 50.2
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.6e-106 390.6 429 49.2
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.1e-106 390.2 329 58.4
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.7e-106 389.8 431 49.2
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.8e-105 387.1 429 48.7
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.3e-105 386.7 413 50.1
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.3e-105 386.7 418 50.0
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.9e-105 386.0 424 50.2
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 3.9e-105 386.0 281 64.1
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.5e-104 384.0 427 48.9
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 2.6e-104 383.3 436 48.6
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 9.7e-104 381.3 431 48.3
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 9.7e-104 381.3 434 48.4
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 2.8e-103 379.8 440 48.2
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.8e-103 379.8 438 50.0
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 3.7e-103 379.4 436 49.5
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 3.7e-103 379.4 431 48.3
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.3e-103 378.6 424 48.6
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 6.3e-103 378.6 427 48.5
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-102 377.1 446 47.3
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 2.4e-102 376.7 430 49.3
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 7.0e-102 375.2 434 48.2
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.5e-101 374.0 433 46.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.3e-100 370.9 434 47.2
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-100 370.9 434 47.2
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.2e-100 370.2 428 48.6
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-100 369.8 446 46.6
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.8e-100 369.4 431 47.3
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.5e-99 366.7 431 47.1
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.2e-98 364.4 424 47.9
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.6e-98 364.0 443 46.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 8.8e-97 358.2 430 47.7
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-96 357.8 443 44.5
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.5e-96 357.5 425 47.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.3e-96 356.3 443 44.5
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.7e-96 355.5 431 46.2
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-95 354.0 442 43.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.7e-95 354.0 300 59.0
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.2e-95 353.6 411 48.2
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 3.7e-95 352.8 417 47.0
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 8.2e-95 351.7 397 49.4
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.1e-94 351.3 418 46.2
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.1e-94 349.7 418 45.7
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.6e-93 347.4 455 43.5
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.6e-93 346.7 427 45.7
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.6e-93 346.7 412 46.8
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 4.5e-93 345.9 426 47.7
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 5.9e-93 345.5 433 43.6
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.8e-92 342.8 436 42.0
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.8e-92 342.8 409 47.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.8e-89 334.0 271 61.3
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.0e-89 333.2 448 44.2
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 4.4e-88 329.3 363 46.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.4e-86 323.6 423 40.7
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.5e-85 319.7 271 60.1
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-84 317.4 437 41.9
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.7e-84 317.4 429 39.4
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.5e-83 314.3 443 44.7
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.5e-83 314.3 429 41.7
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.2e-82 311.2 430 41.6
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.8e-81 307.4 432 43.5
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 5.2e-81 305.8 444 42.1
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.4e-80 303.1 288 52.8
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 4.1e-78 296.2 292 51.7
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 4.5e-77 292.7 489 38.2
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.4e-65 254.6 428 36.2
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.6e-64 250.4 139 87.8
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.7e-63 247.7 195 58.5
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.3e-63 245.4 278 47.8
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.8e-61 238.8 178 64.0
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.3e-51 205.7 272 40.8
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.2e-50 204.9 296 38.5
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.4e-46 190.7 422 33.9
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 3.2e-46 190.3 100 91.0
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 5.1e-44 183.0 296 39.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.8e-34 150.6 81 86.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.8e-32 142.9 120 56.7
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.3e-31 141.7 329 33.7
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.2e-29 135.2 88 68.2
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 3.3e-27 127.1 89 69.7
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.8e-26 124.0 84 63.1
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 9.0e-25 119.0 80 71.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.6e-24 117.5 132 44.7
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.7e-21 107.5 53 90.6
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 4.3e-19 100.1 90 55.6
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 9.6e-19 99.0 55 83.6
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.4e-14 85.1 246 28.9
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 4.5e-08 63.5 194 26.3
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 7.6e-08 62.8 84 40.5


User provided reference genes

Program Settings