Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 2.4e-174 615.5 346 100.0
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 2.3e-132 476.1 349 81.9
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.3e-132 476.1 349 81.4
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.5e-131 473.4 349 82.5
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 6.1e-125 451.4 328 82.0
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.6e-123 446.0 348 77.6
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.8e-116 423.3 346 75.4
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.8e-116 423.3 346 75.4
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.8e-116 423.3 346 75.4
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 6.3e-114 414.8 337 77.2
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 2.5e-110 402.9 344 73.5
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 4.1e-105 385.6 338 72.2
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 2.1e-101 373.2 340 65.3
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 9.8e-99 364.4 326 70.6
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.4e-73 280.0 178 79.2
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.4e-73 280.0 178 79.2
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.1e-73 279.3 178 78.7
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 6.0e-72 275.4 172 80.8
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.0e-71 274.6 172 80.2
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 6.6e-71 271.9 314 53.8
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.3e-70 269.6 170 78.2
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 4.3e-70 269.2 173 76.3
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 1.2e-69 267.7 171 80.1
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.1e-69 266.9 170 77.6
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.1e-69 266.9 319 54.9
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 3.6e-69 266.2 174 78.2
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 3.6e-69 266.2 289 57.1
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 3.1e-68 263.1 180 73.3
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 5.2e-68 262.3 338 54.4
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 6.8e-68 261.9 173 76.3
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.0e-67 260.4 347 53.0
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.0e-67 260.4 165 78.2
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 4.9e-66 255.8 170 77.1
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 6.4e-66 255.4 175 73.7
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 8.3e-66 255.0 197 67.5
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 2.4e-65 253.4 199 65.8
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.6e-64 249.2 201 67.7
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 6.0e-64 248.8 324 49.4
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 7.8e-64 248.4 172 71.5
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.0e-63 248.1 174 72.4
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.3e-63 247.7 176 72.2
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 1.7e-63 247.3 329 51.7
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 2.3e-63 246.9 347 49.0
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.3e-63 246.9 176 73.9
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 2.3e-63 246.9 181 68.5
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 3.9e-63 246.1 169 75.1
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 3.9e-63 246.1 331 51.4
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.3e-62 242.7 165 75.8
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.3e-62 242.7 184 67.9
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 9.5e-62 241.5 170 71.2
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 9.5e-62 241.5 173 71.7
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 9.5e-62 241.5 165 73.9
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 8.1e-61 238.4 196 63.3
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.1e-61 238.4 196 63.3
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 1.1e-60 238.0 199 62.3
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.1e-60 238.0 392 46.9
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.4e-60 237.7 169 68.0
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 3.1e-60 236.5 161 76.4
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 2.0e-59 233.8 329 45.9
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 2.0e-59 233.8 330 45.8
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 2.6e-59 233.4 335 49.0
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.4e-59 233.0 172 71.5
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 4.4e-59 232.6 173 68.2
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 4.4e-59 232.6 186 67.2
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 7.6e-59 231.9 314 46.8
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.3e-58 231.1 335 47.5
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.7e-58 230.7 326 46.0
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.2e-58 230.3 169 69.8
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 6.4e-58 228.8 176 71.0
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.4e-57 227.6 191 62.3
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 1.4e-57 227.6 181 68.0
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 4.2e-57 226.1 331 47.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 7.1e-57 225.3 158 72.8
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 7.1e-57 225.3 167 71.3
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.2e-56 224.6 184 64.1
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.2e-56 224.6 184 63.6
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 1.2e-56 224.6 176 70.5
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 2.1e-56 223.8 359 44.8
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 6.0e-56 222.2 175 68.6
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 1.7e-55 220.7 170 66.5
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 3.0e-55 219.9 172 70.3
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.9e-54 217.2 327 48.0
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 3.3e-54 216.5 166 66.3
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.2e-53 214.5 174 69.0
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 1.6e-53 214.2 306 47.4
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.6e-53 214.2 356 46.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.4e-52 211.1 165 67.3
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.8e-52 210.7 176 63.1
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 3.1e-52 209.9 165 66.7
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 5.3e-52 209.1 128 81.2
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 9.0e-52 208.4 173 64.7
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.3e-50 204.5 316 44.0
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.4e-49 201.1 173 61.8
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.5e-46 191.0 124 75.8
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 2.5e-46 190.3 168 60.1
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 4.3e-46 189.5 171 60.8
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 4.3e-46 189.5 171 60.8
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 7.3e-46 188.7 174 59.2
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.4e-44 183.7 197 54.8
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 6.9e-44 182.2 162 58.6
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 9.9e-43 178.3 168 57.1
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 1.7e-42 177.6 163 58.3
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.2e-42 177.2 290 42.8
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 7.1e-41 172.2 124 70.2
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 2.1e-37 160.6 104 78.8
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 2.6e-35 153.7 119 69.7
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 2.5e-33 147.1 124 62.9
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 5.6e-30 136.0 94 68.1
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.1e-25 121.7 168 39.9
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.6e-24 117.9 110 61.8
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 3.5e-24 116.7 202 36.6
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 6.7e-23 112.5 64 87.5
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.1e-20 105.1 71 77.5
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 7.2e-17 92.4 105 53.3
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.8e-12 77.8 165 45.5
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 3.1e-12 77.0 73 58.9
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.2e-10 70.9 40 80.0
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 3.8e-10 70.1 129 35.7
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 3.8e-10 70.1 213 30.5
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 8.5e-10 68.9 39 79.5
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.4e-09 68.2 45 73.3
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 3.2e-09 67.0 42 76.2
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 4.7e-08 63.2 107 42.1
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 1.4e-07 61.6 41 73.2
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 3.0e-07 60.5 138 37.0
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 7.4e-06 55.8 35 71.4


User provided reference genes

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