Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 6.1e-280 966.8 491 100.0
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.2e-251 872.8 517 86.5
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.3e-250 868.6 517 86.1
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 5.8e-246 854.0 505 85.9
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 4.9e-245 850.9 505 85.7
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 3.9e-242 841.3 510 84.9
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.5e-241 839.3 510 84.7
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.0e-239 831.2 517 83.6
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.6e-235 817.8 517 82.2
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 4.4e-230 801.2 517 80.1
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.3e-226 789.6 518 78.8
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 6.9e-223 777.3 508 79.9
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 4.8e-208 728.0 518 73.9
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.4e-207 726.5 518 73.9
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 6.9e-207 724.2 518 73.9
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 2.6e-206 722.2 518 72.8
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 3.4e-206 721.8 518 73.4
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.7e-205 719.5 526 71.9
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.2e-204 714.9 525 72.0
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 5.5e-204 714.5 518 72.4
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.6e-203 713.0 518 72.2
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 6.0e-203 711.1 518 72.6
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.1e-201 706.8 518 71.6
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.3e-200 703.4 527 67.6
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 2.4e-199 699.1 508 72.2
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 2.4e-199 699.1 527 67.4
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.2e-198 696.8 523 70.7
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 1.3e-197 693.3 528 66.3
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 3.8e-197 691.8 527 66.8
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 4.9e-197 691.4 537 67.8
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 8.4e-197 690.6 523 66.3
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 8.4e-197 690.6 527 67.0
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.1e-196 690.3 527 66.6
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.1e-196 690.3 520 67.5
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 2.3e-194 682.6 527 66.2
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 5.7e-193 677.9 526 64.8
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 2.8e-192 675.6 527 64.3
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 1.1e-191 673.7 528 65.9
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 3.1e-191 672.2 527 66.0
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 9.0e-191 670.6 525 65.0
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 2.0e-190 669.5 527 65.1
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.5e-190 668.3 523 65.8
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 5.9e-190 667.9 528 65.5
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 7.7e-190 667.5 523 64.8
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.7e-189 666.4 527 65.1
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 2.9e-189 665.6 527 64.9
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 2.9e-189 665.6 527 65.5
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 3.8e-189 665.2 507 65.3
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 7.2e-188 661.0 527 64.1
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 7.2e-188 661.0 527 65.1
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.2e-187 660.2 519 65.7
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.6e-187 659.8 527 63.9
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 6.1e-187 657.9 520 65.0
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 7.9e-187 657.5 533 63.2
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.8e-186 656.4 529 63.1
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 2.3e-186 656.0 522 65.7
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 6.7e-186 654.4 527 63.8
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 1.1e-185 653.7 520 64.6
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 4.3e-185 651.7 518 64.9
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 7.4e-185 651.0 523 63.3
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.8e-184 648.3 527 62.8
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 4.8e-184 648.3 527 63.9
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.1e-183 647.1 527 63.8
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.1e-183 645.2 529 63.3
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 4.1e-183 645.2 525 63.6
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 5.3e-183 644.8 526 63.9
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 2.6e-182 642.5 574 59.2
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.2e-181 639.4 526 63.3
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 3.8e-181 638.6 522 63.8
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 3.8e-181 638.6 522 63.8
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 6.5e-181 637.9 506 63.6
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 6.5e-181 637.9 515 63.9
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 1.4e-180 636.7 506 64.8
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.9e-180 636.3 498 65.1
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 7.2e-180 634.4 518 63.3
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 9.4e-180 634.0 511 64.0
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 1.6e-179 633.3 570 58.4
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 3.6e-179 632.1 528 62.1
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 4.7e-179 631.7 528 62.1
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.4e-178 630.2 517 64.0
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 8.8e-178 627.5 523 63.1
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.1e-177 627.1 512 62.9
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 2.6e-177 625.9 527 61.7
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 7.4e-177 624.4 538 60.6
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.1e-175 620.5 528 60.6
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 5.3e-175 618.2 515 60.0
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 1.0e-173 614.0 472 66.5
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 6.5e-173 611.3 519 60.5
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.4e-172 610.1 515 60.0
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 8.0e-171 604.4 495 64.0
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 6.7e-170 601.3 520 58.5
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 9.7e-169 597.4 517 61.3
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 5.9e-166 588.2 501 61.7
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 3.2e-164 582.4 530 57.9
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.8e-159 566.6 514 58.0
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.2e-158 563.9 515 58.6
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 5.9e-158 561.6 515 58.4
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.0e-157 560.8 505 57.0
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 2.2e-157 559.7 512 57.2
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 2.9e-157 559.3 559 54.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 8.8e-154 547.7 530 54.9
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 2.0e-153 546.6 433 63.3
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.3e-152 543.9 528 55.7
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 4.1e-151 538.9 412 65.3
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 2.0e-150 536.6 507 55.4
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.7e-150 536.2 444 61.3
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 6.8e-146 521.5 522 55.0
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 4.1e-143 512.3 459 60.1
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 2.3e-141 506.5 497 54.1
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 1.9e-127 460.3 446 56.3
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 6.2e-115 418.7 352 62.2
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 3.1e-114 416.4 543 43.6
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 3.1e-114 416.4 531 45.0
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 8.7e-109 398.3 405 53.8
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 4.3e-108 396.0 391 53.5
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 7.3e-108 395.2 503 43.3
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 2.1e-91 340.5 486 41.4
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 3.9e-85 319.7 477 41.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 5.7e-60 236.1 260 52.3
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 6.3e-51 206.1 139 73.4
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 4.4e-44 183.3 424 37.3
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.3e-40 171.8 130 66.9
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-35 154.8 150 60.7
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 2.2e-27 127.9 98 71.4
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.1e-22 111.3 79 69.6
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-22 109.8 143 37.1
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 5.2e-21 106.7 72 65.3
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 2.0e-20 104.8 78 61.5
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.1e-18 99.0 72 69.4
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 4.1e-18 97.1 99 49.5
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 2.3e-16 91.3 140 34.3
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 8.9e-13 79.3 105 49.5
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-09 68.2 64 46.9
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.7e-08 65.1 49 65.3


User provided reference genes

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