Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1966.4 989 100.0
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1924.4 989 97.2
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1914.4 991 96.7
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1906.3 1001 95.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1906.0 990 96.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1895.6 989 95.7
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1894.8 991 95.8
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1889.4 990 95.2
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1881.7 994 95.1
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1880.9 989 94.8
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1873.6 989 95.2
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1868.2 1004 93.7
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1857.4 1004 93.4
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1849.3 1006 92.8
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1812.3 1039 89.4
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1806.2 997 91.2
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1796.9 985 90.2
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1710.7 989 84.4
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1706.4 987 84.8
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1705.6 990 84.4
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1695.2 989 83.5
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1692.9 989 83.8
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1691.4 989 83.7
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1689.5 989 83.9
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 989 83.9
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 990 83.3
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 989 83.0
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1680.6 989 83.3
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1679.5 989 83.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1676.8 989 83.2
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 989 82.6
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1668.3 989 83.0
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 990 82.1
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 989 82.4
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1653.3 989 81.9
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 989 81.4
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 989 81.3
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 989 81.9
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1644.8 990 81.4
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1644.4 990 81.5
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1642.9 990 82.0
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1642.1 999 81.0
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1638.6 989 81.0
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1636.7 1013 79.8
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 1015 80.1
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 986 81.9
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1634.0 1013 79.7
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1632.5 990 80.8
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1632.5 989 80.5
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1629.0 990 80.8
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1627.1 988 80.9
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 848 96.2
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1625.5 989 80.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 1084 75.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 991 80.4
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1615.9 1013 78.8
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1615.1 998 80.1
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1614.7 990 80.5
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1610.9 991 79.5
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1607.8 1006 79.5
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1606.7 991 80.3
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1606.3 994 80.2
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1605.9 989 80.6
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1605.9 1027 78.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 989 79.1
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1601.3 1077 75.2
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1600.9 997 79.3
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1600.5 988 80.3
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1594.7 989 79.0
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 991 78.8
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1591.6 991 79.5
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1588.9 989 80.1
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1585.9 989 79.1
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1585.5 990 79.6
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1582.4 988 79.1
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1571.2 990 78.4
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1571.2 987 78.7
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1566.2 994 77.9
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1565.1 936 82.4
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1559.3 990 77.7
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1545.0 990 77.6
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1536.9 1025 75.8
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1535.4 987 77.3
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1530.4 989 77.0
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1525.8 938 79.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1521.1 1020 74.5
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1498.8 980 74.7
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1490.7 926 80.5
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1474.1 990 75.1
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1446.4 990 74.0
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1443.3 896 79.0
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1412.1 980 70.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1354.0 818 82.3
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1352.8 995 68.7
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1351.3 785 84.5
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1327.4 792 83.1
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1313.1 772 84.1
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1310.4 850 77.3
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1302.3 793 81.1
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1300.0 792 80.6
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1286.2 953 68.8
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1271.5 760 83.0
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1268.4 995 67.5
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1246.1 764 80.9
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1181.4 783 77.1
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1171.8 988 60.1
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1162.5 982 59.6
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1122.1 762 75.3
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 2.5e-296 1022.3 979 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 1.6e-287 993.0 788 62.2
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.4e-286 989.9 611 80.4
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.4e-286 989.9 643 77.6
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 9.4e-280 967.2 665 72.6
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 1.7e-276 956.4 567 83.2
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.9e-252 875.9 574 76.7
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.9e-244 849.4 519 80.5
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 3.0e-241 839.3 518 80.1
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 2.5e-240 836.3 611 66.3
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.5e-200 703.4 418 80.9
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.5e-163 581.3 336 83.9
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.1e-150 537.0 337 76.9
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.9e-141 506.1 282 85.1
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.2e-122 445.3 1069 31.3
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 4.6e-117 426.8 249 84.3
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.9e-110 404.8 207 95.7
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 3.2e-102 377.5 230 77.8
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.7e-101 374.4 1037 28.0
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 6.6e-100 369.8 268 72.8
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 8.7e-100 369.4 231 74.9
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.3e-98 365.5 1270 27.1
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 6.7e-92 343.2 204 80.4
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-87 328.9 231 68.8
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 2.9e-79 301.2 178 80.3
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 8.7e-76 289.7 292 53.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 5.7e-75 287.0 199 70.4
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 5.9e-72 276.9 441 39.5
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.5e-67 262.3 153 80.4
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.9e-65 253.4 207 61.8
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.5e-54 219.2 153 68.6
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 2.5e-54 218.4 127 77.2
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.3e-44 185.3 135 61.5
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 9.8e-43 179.9 163 62.0
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.2e-38 164.5 174 58.6
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 9.4e-38 163.3 121 63.6
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.6e-35 155.2 111 68.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.5e-35 153.7 99 73.7
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.7e-34 151.4 94 78.7
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-31 142.5 88 73.9
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-29 135.6 73 91.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 6.8e-28 130.6 131 60.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.0e-27 129.0 114 64.9
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.4e-25 122.1 98 60.2
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.2e-25 121.7 75 77.3
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.2e-25 120.2 91 68.1
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.2e-25 120.2 91 68.1
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 5.9e-24 117.5 70 81.4
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.7e-23 115.9 81 66.7
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.8e-21 108.6 80 76.2
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 6.4e-18 97.4 52 88.5
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.6e-16 91.3 105 44.8
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 6.0e-16 90.9 88 51.1
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-14 86.7 54 74.1
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.8e-12 79.3 48 66.7
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.3e-12 79.0 231 23.8
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 8.9e-12 77.0 160 33.8
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 5.1e-07 61.2 61 52.5
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 7.3e-06 57.4 30 83.3


User provided reference genes

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