Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.5e-267 924.9 461 100.0
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.5e-243 845.1 460 93.0
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.5e-243 845.1 460 93.0
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 4.7e-242 840.9 460 92.2
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 6.0e-237 823.9 409 98.5
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.3e-236 822.0 437 93.4
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 9.6e-235 816.6 413 96.9
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.4e-233 812.8 409 96.8
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.8e-233 812.4 409 97.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 3.1e-233 811.6 409 96.6
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 4.0e-233 811.2 410 96.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 5.3e-233 810.8 409 96.6
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 9.0e-233 810.1 409 96.6
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.2e-232 809.7 410 96.8
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.1e-225 786.6 409 93.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.1e-222 776.5 417 92.6
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 4.9e-215 751.1 409 88.3
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 8.4e-215 750.4 410 88.8
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 8.4e-215 750.4 409 88.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.1e-214 750.0 406 89.2
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.1e-214 750.0 409 87.5
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.5e-214 748.8 409 87.3
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 3.2e-214 748.4 406 88.4
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 4.2e-214 748.0 406 88.4
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 5.5e-214 747.7 409 88.3
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 7.1e-214 747.3 406 88.4
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.6e-213 746.1 406 88.4
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.6e-213 746.1 406 88.7
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.6e-213 746.1 407 88.9
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-213 745.7 406 88.7
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.5e-213 745.0 407 86.7
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 4.6e-213 744.6 410 88.0
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.6e-213 744.6 409 86.1
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 4.6e-213 744.6 409 87.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 4.6e-213 744.6 406 87.9
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 4.6e-213 744.6 408 86.5
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 4.6e-213 744.6 409 86.8
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 6.0e-213 744.2 407 87.2
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 6.0e-213 744.2 409 87.8
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 7.9e-213 743.8 409 86.8
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 7.9e-213 743.8 409 88.3
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 7.9e-213 743.8 408 86.8
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 7.9e-213 743.8 409 88.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.3e-212 743.0 410 87.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.3e-212 743.0 409 87.5
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.8e-212 742.7 408 86.8
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.3e-212 742.3 409 86.6
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 2.3e-212 742.3 410 86.8
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 3.0e-212 741.9 409 87.8
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 3.0e-212 741.9 409 86.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.0e-212 741.9 406 88.2
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.0e-212 741.9 407 87.0
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 3.0e-212 741.9 407 87.5
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 5.1e-212 741.1 410 87.3
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 5.1e-212 741.1 409 88.3
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 5.1e-212 741.1 409 86.8
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 6.7e-212 740.7 409 85.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 6.7e-212 740.7 409 87.0
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 6.7e-212 740.7 409 86.8
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 8.7e-212 740.3 407 86.5
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 8.7e-212 740.3 411 87.8
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.1e-211 740.0 409 86.3
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.1e-211 740.0 406 88.2
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.5e-211 739.6 409 87.0
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.5e-211 739.6 409 86.1
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.5e-211 739.6 409 85.8
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.9e-211 739.2 409 86.3
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.5e-211 738.8 409 86.3
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 4.3e-211 738.0 407 86.7
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.7e-211 737.6 425 84.9
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 5.7e-211 737.6 409 87.3
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 9.6e-211 736.9 409 85.6
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.6e-210 736.1 407 87.5
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.6e-210 736.1 407 86.5
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 2.1e-210 735.7 410 86.6
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.8e-210 735.3 409 86.3
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.8e-210 735.3 409 85.6
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.8e-210 735.3 421 84.8
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.8e-210 735.3 411 85.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 4.8e-210 734.6 409 85.3
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 4.8e-210 734.6 408 85.8
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 4.1e-209 731.5 409 84.8
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 6.9e-209 730.7 410 86.6
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 6.9e-209 730.7 409 85.6
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.2e-208 729.9 407 85.7
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.2e-208 729.9 409 86.6
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.5e-208 729.6 409 85.3
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.0e-208 729.2 452 79.2
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.0e-208 729.2 409 84.8
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.0e-208 729.2 409 85.3
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.6e-208 728.8 409 85.6
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 4.5e-208 728.0 409 86.1
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.6e-208 727.2 409 84.8
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 7.6e-208 727.2 409 85.3
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.8e-207 724.9 406 86.0
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 8.4e-207 723.8 410 84.6
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.1e-206 723.4 400 87.8
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-206 723.4 410 84.6
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.4e-206 723.0 358 98.0
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 5.5e-206 721.1 436 81.2
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.6e-205 719.5 451 79.2
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 3.5e-205 718.4 476 76.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.6e-205 718.0 409 82.9
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.0e-204 716.8 409 84.8
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.3e-204 716.5 409 82.6
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.8e-204 716.1 415 83.9
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.0e-204 715.3 409 84.4
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 3.9e-204 714.9 415 83.6
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.9e-204 714.9 409 83.9
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 4.1e-201 704.9 383 88.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 6.9e-201 704.1 405 82.0
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.9e-200 701.0 405 82.2
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.1e-197 692.6 380 87.9
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 2.7e-197 692.2 388 86.6
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.7e-197 692.2 385 86.0
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.8e-196 689.5 452 74.1
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.5e-195 686.4 520 68.3
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 4.1e-193 678.3 413 79.2
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 9.1e-193 677.2 358 89.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 4.2e-190 668.3 415 77.8
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.2e-189 666.8 356 89.3
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 6.3e-186 654.4 402 78.9
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 3.1e-185 652.1 379 81.3
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 7.7e-184 647.5 408 75.0
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.0e-181 637.5 443 75.8
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 8.0e-181 637.5 409 78.2
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.2e-174 615.5 405 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 7.2e-174 614.4 406 73.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 6.1e-173 611.3 404 72.5
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 7.0e-169 597.8 322 87.9
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.2e-168 597.0 382 72.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 7.0e-161 571.2 400 69.0
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.3e-151 540.4 387 70.3
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.9e-145 520.0 324 78.1
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.4e-139 498.8 309 78.6
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 7.1e-137 491.5 400 61.2
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.1e-129 467.6 245 91.0
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 5.1e-127 458.8 258 84.5
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.1e-124 451.1 289 81.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 2.4e-124 449.9 368 61.1
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.2e-120 437.6 385 56.4
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.5e-118 430.6 239 85.8
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 6.4e-114 415.2 228 87.7
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 9.6e-94 348.2 197 84.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.0e-78 297.4 420 41.2
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 6.1e-72 275.8 392 42.3
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.6e-67 261.2 183 70.5
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.2e-64 251.5 180 68.3
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 8.5e-58 228.8 141 75.2
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.5e-57 228.0 140 75.7
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.7e-56 223.8 130 83.1
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.5e-50 202.6 121 81.8
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 4.6e-19 100.1 128 46.1
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 7.8e-19 99.4 58 74.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 6.0e-11 73.2 337 23.1


User provided reference genes

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