Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 6.3e-115 417.5 226 100.0
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.3e-96 355.9 227 88.5
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-94 350.1 226 87.2
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 8.9e-93 344.0 226 86.3
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.5e-92 343.2 226 85.0
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 9.9e-92 340.5 226 85.4
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 9.9e-92 340.5 226 85.4
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 2.5e-87 325.9 226 81.4
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 3.3e-87 325.5 228 81.1
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 3.3e-87 325.5 228 81.1
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 1.3e-83 313.5 226 77.4
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.4e-83 311.2 228 78.9
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.4e-83 311.2 228 78.9
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.4e-83 311.2 228 78.9
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 3.2e-82 308.9 227 77.5
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 2.5e-79 299.3 226 76.5
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.3e-75 287.0 226 76.1
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.9e-75 285.0 226 75.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 6.0e-73 278.1 228 72.4
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.3e-59 233.8 227 61.7
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 5.5e-58 228.4 226 58.8
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.2e-57 227.3 227 61.2
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 4.6e-57 225.3 231 58.4
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.3e-56 223.8 230 59.1
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.1e-56 221.9 227 61.2
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 8.7e-56 221.1 229 59.0
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.5e-55 220.3 227 59.0
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.3e-55 219.2 227 59.9
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 4.3e-55 218.8 229 58.5
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 4.3e-55 218.8 222 59.0
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 4.3e-55 218.8 219 59.8
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.7e-55 218.4 226 57.5
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 7.4e-55 218.0 232 59.1
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 9.6e-55 217.6 227 59.9
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 2.8e-54 216.1 228 57.5
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 6.3e-54 214.9 226 57.1
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.4e-53 213.0 231 57.6
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 2.4e-53 213.0 234 56.8
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.1e-53 212.6 222 57.7
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 3.1e-53 212.6 222 59.9
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 4.1e-53 212.2 231 58.0
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 6.9e-53 211.5 229 58.1
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 9.0e-53 211.1 231 57.1
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.5e-52 210.3 220 58.2
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 4.5e-52 208.8 250 53.6
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.8e-51 205.7 267 50.6
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.8e-51 205.7 227 56.8
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 6.5e-51 204.9 215 57.7
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 6.5e-51 204.9 232 59.1
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 8.4e-51 204.5 227 56.4
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.1e-50 204.1 231 55.8
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 1.1e-50 204.1 229 56.8
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.9e-50 203.4 240 55.0
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.9e-50 203.4 227 56.8
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.9e-50 203.4 229 56.8
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.5e-50 203.0 218 56.9
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 5.5e-50 201.8 223 58.7
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 2.1e-49 199.9 219 55.3
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.1e-49 199.9 222 54.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.5e-49 199.1 229 55.9
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 6.1e-49 198.4 229 55.9
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 7.9e-49 198.0 213 56.3
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.8e-48 196.8 230 52.6
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.1e-47 194.1 221 55.7
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.5e-47 193.7 216 55.6
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.5e-47 193.7 213 56.3
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.9e-47 193.4 225 52.9
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.5e-47 193.0 226 57.5
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 2.5e-47 193.0 236 52.5
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.3e-47 192.6 204 56.9
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 4.3e-47 192.2 224 56.7
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 5.7e-47 191.8 217 53.5
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.6e-46 190.3 220 55.0
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.2e-46 189.9 220 53.6
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 2.8e-46 189.5 226 55.8
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 3.7e-46 189.1 227 52.9
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 4.8e-46 188.7 234 52.6
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-45 187.2 226 50.9
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-45 186.4 218 52.8
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.1e-45 186.0 215 56.7
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 5.3e-45 185.3 221 53.4
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 6.9e-45 184.9 221 52.5
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.5e-44 183.7 227 53.3
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 2.0e-44 183.3 227 51.5
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.6e-44 183.0 230 53.9
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.6e-44 183.0 226 51.3
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 3.4e-44 182.6 221 52.5
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 3.4e-44 182.6 212 55.2
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 7.7e-44 181.4 230 52.2
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.0e-43 181.0 240 49.2
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.3e-43 180.6 217 50.7
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 3.2e-42 176.0 237 48.9
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 3.2e-42 176.0 228 52.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 4.2e-42 175.6 228 50.9
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 9.4e-42 174.5 221 52.0
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.6e-41 173.7 228 50.9
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 3.6e-41 172.6 217 50.2
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.6e-41 172.2 231 49.8
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.8e-40 170.2 325 40.0
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.8e-40 170.2 205 51.2
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.5e-39 167.2 220 50.5
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.5e-39 166.4 227 50.7
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.3e-39 166.0 225 48.4
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 5.7e-39 165.2 225 51.1
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 7.4e-39 164.9 254 45.3
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.2e-38 163.3 189 56.1
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.2e-38 163.3 189 56.1
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.7e-38 162.5 266 44.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 3.7e-38 162.5 266 44.7
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 1.2e-36 157.5 226 46.9
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.4e-36 156.0 186 53.8
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 4.5e-36 155.6 228 47.4
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.7e-35 153.7 214 46.7
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.2e-35 153.3 225 47.1
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 4.7e-33 145.6 228 46.1
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 7.9e-33 144.8 177 53.1
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.4e-32 144.1 225 45.3
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.4e-29 133.3 212 44.8
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 2.2e-27 126.7 209 44.5
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.8e-27 125.9 228 43.9
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 3.8e-27 125.9 228 43.9
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.9e-26 123.6 215 42.3
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 2.5e-26 123.2 92 76.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 2.5e-26 123.2 217 44.2
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 7.2e-26 121.7 154 50.6
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.8e-24 117.1 155 50.3
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 3.0e-24 116.3 153 50.3
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 3.3e-23 112.8 96 63.5
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.7e-22 110.5 224 39.3
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.1e-21 105.9 313 35.5
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 4.5e-20 102.4 154 47.4
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.7e-19 100.5 240 36.2
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.2e-19 100.1 143 48.3
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.2e-18 95.9 218 34.9
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 8.0e-17 91.7 52 90.4
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 8.0e-17 91.7 52 90.4
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 5.2e-16 89.0 124 46.0
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 1.1e-13 81.3 84 53.6
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 4.1e-13 79.3 160 41.9
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.1e-09 67.0 52 65.4
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.0e-08 64.7 153 37.9
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 6.8e-08 62.0 82 53.7
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 8.8e-08 61.6 92 45.7
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 8.8e-08 61.6 40 70.0
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 5.7e-07 58.9 125 39.2
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 7.5e-07 58.5 93 41.9
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 1.3e-06 57.8 98 39.8
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.7e-06 56.2 42 66.7
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.9e-06 55.8 71 43.7
BolC8t50896H Brassica oleracea HOM05D014273 ORTHO05D041832 8.3e-06 55.1 40 65.0
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 8.3e-06 55.1 42 66.7


User provided reference genes

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