Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.3e-211 738.8 419 100.0
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.6e-140 502.3 410 72.7
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 3.2e-136 489.2 415 73.0
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 8.7e-134 481.1 396 74.7
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 8.1e-132 474.6 417 70.3
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 8.1e-132 474.6 412 71.6
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.4e-131 473.0 407 75.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 9.0e-131 471.1 408 73.3
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 9.0e-131 471.1 408 73.3
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 4.9e-129 465.3 420 68.8
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-128 463.4 407 75.2
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.9e-109 400.2 428 61.2
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.8e-108 396.4 398 64.6
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.2e-105 386.7 410 63.9
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.2e-104 381.7 398 58.8
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.2e-103 380.9 405 65.2
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 6.5e-97 358.6 385 65.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 9.4e-96 354.8 403 58.1
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 2.3e-94 350.1 409 57.7
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.9e-94 349.4 426 55.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.6e-93 346.7 416 56.0
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 7.4e-93 345.1 411 57.4
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 7.4e-93 345.1 411 57.4
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.1e-91 341.3 407 58.2
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 6.5e-89 332.0 407 56.8
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 6.5e-89 332.0 407 56.8
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 6.5e-89 332.0 407 56.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 4.7e-87 325.9 404 60.6
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 4.7e-87 325.9 416 55.8
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 4.7e-87 325.9 416 55.8
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.8e-70 270.8 394 51.0
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.0e-70 270.0 411 47.4
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.0e-70 269.6 411 47.4
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 4.0e-70 269.6 410 47.6
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.2e-70 269.2 411 47.0
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 7.0e-67 258.8 408 45.6
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 3.5e-66 256.5 413 44.8
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-64 251.5 403 45.7
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.1e-64 251.5 399 45.1
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.1e-64 251.5 411 47.2
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 9.5e-64 248.4 409 46.7
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.1e-63 247.3 396 46.7
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 2.3e-62 243.8 429 42.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.5e-61 241.1 412 45.9
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.3e-60 238.0 402 45.8
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.3e-60 235.3 396 45.5
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.1e-59 235.0 395 43.0
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.4e-59 234.6 400 44.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.4e-59 233.8 399 44.1
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.0e-59 232.3 404 43.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 9.2e-59 231.9 405 44.7
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.6e-58 231.1 423 43.7
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.7e-58 230.3 406 45.3
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.9e-58 229.2 406 43.3
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.7e-57 227.6 403 41.9
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.6e-55 221.1 286 57.7
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.6e-55 221.1 409 44.7
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.7e-55 219.5 420 43.3
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 6.1e-55 219.2 400 40.8
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.0e-54 216.9 397 44.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.2e-54 216.1 395 45.3
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 6.8e-54 215.7 404 40.6
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 8.9e-54 215.3 433 43.4
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.0e-53 214.2 408 42.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 2.6e-53 213.8 393 42.5
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 5.8e-53 212.6 399 41.9
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 9.8e-53 211.8 352 44.6
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 3.7e-52 209.9 418 43.1
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.7e-52 209.9 413 40.9
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 3.7e-52 209.9 415 43.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 4.9e-52 209.5 406 43.1
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 6.4e-52 209.1 413 44.3
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 8.3e-52 208.8 393 42.7
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.1e-51 208.4 411 42.8
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.1e-51 208.4 388 45.4
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 2.4e-51 207.2 405 43.7
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 4.1e-51 206.5 344 45.1
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.7e-50 203.8 405 41.2
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 4.6e-50 203.0 400 42.5
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 6.0e-50 202.6 405 40.7
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 6.0e-50 202.6 410 43.9
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.0e-49 201.8 399 44.1
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.3e-49 201.4 416 40.6
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.0e-49 200.3 406 42.6
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.0e-49 200.3 405 42.7
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 6.6e-49 199.1 404 40.6
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 8.6e-49 198.7 396 40.2
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.5e-48 198.0 412 43.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.9e-48 197.6 347 42.7
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 2.5e-48 197.2 427 40.3
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 5.6e-48 196.1 414 40.1
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.6e-47 194.5 405 38.5
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.8e-47 193.7 410 38.0
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 8.0e-47 192.2 364 43.1
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.4e-46 191.4 401 44.4
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.3e-46 190.7 399 39.6
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 5.2e-46 189.5 416 41.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 6.8e-46 189.1 391 41.9
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.2e-45 188.3 409 41.3
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.2e-45 188.3 399 40.6
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 3.4e-45 186.8 366 41.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 3.4e-45 186.8 389 40.9
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 7.5e-45 185.7 405 38.8
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 9.8e-45 185.3 399 39.1
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.3e-44 184.9 386 40.4
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.2e-44 184.1 380 42.1
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.2e-44 184.1 408 43.9
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.7e-44 183.3 388 39.9
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.9e-44 183.0 408 38.2
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.1e-43 181.8 403 37.5
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.1e-43 181.8 387 39.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.9e-43 181.0 400 37.2
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 2.4e-43 180.6 380 41.6
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.4e-43 180.6 436 40.6
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.4e-43 180.6 403 41.7
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.6e-42 177.9 413 41.4
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 7.8e-42 175.6 408 38.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.3e-41 174.9 293 45.4
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.6e-41 172.6 341 39.9
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.6e-39 166.8 409 36.4
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-38 165.2 216 50.5
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 6.4e-36 156.0 171 57.3
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 8.3e-36 155.6 344 38.1
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.5e-34 150.2 198 51.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 6.0e-34 149.4 388 40.2
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 6.0e-34 149.4 360 38.3
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 9.5e-32 142.1 361 32.7
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.4e-30 137.5 455 29.9
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.4e-30 137.5 413 33.9
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 5.2e-30 136.3 351 37.6
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.3e-25 121.7 284 38.0
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.7e-25 121.3 406 32.8
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 6.6e-25 119.4 373 34.0
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 8.7e-25 119.0 399 34.3
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 3.1e-22 110.5 393 32.6
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 4.9e-20 103.2 243 38.7
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 8.4e-20 102.4 267 35.2
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 2.1e-15 87.8 200 40.5
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 8.1e-15 85.9 141 40.4
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 2.4e-14 84.3 342 31.3
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.4e-13 80.5 195 34.9
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 6.0e-10 69.7 161 43.5


User provided reference genes

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