Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 6.3e-244 847.0 442 100.0
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.3e-172 610.1 392 85.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.7e-170 602.4 344 88.7
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.5e-168 596.7 347 89.3
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.3e-168 595.5 341 92.1
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.4e-166 590.1 348 91.4
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.8e-166 589.7 341 91.8
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 4.5e-165 585.1 348 92.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 5.9e-165 584.7 348 91.4
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.3e-164 583.6 356 87.6
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 6.1e-162 574.7 317 95.9
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.4e-160 568.5 350 88.9
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.3e-156 557.0 344 85.8
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 3.1e-150 535.8 324 88.9
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 9.4e-147 524.2 342 82.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 2.2e-135 486.5 339 76.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.8e-135 485.3 336 76.2
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.8e-134 483.4 337 71.5
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.7e-132 476.9 343 74.1
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.8e-132 475.7 343 73.8
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 5.0e-132 475.3 341 73.6
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 7.2e-131 471.5 341 73.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.6e-130 470.3 336 72.9
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 6.1e-130 468.4 319 75.9
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 5.2e-129 465.3 313 72.2
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-128 463.8 320 72.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.6e-128 463.0 314 73.2
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 3.4e-128 462.6 336 72.0
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 7.5e-128 461.5 339 67.8
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 3.7e-127 459.1 318 72.3
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 8.3e-127 458.0 355 70.7
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.1e-126 457.6 338 72.8
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.8e-126 456.8 339 67.3
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.4e-126 456.4 320 69.1
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 3.2e-126 456.1 322 74.5
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 9.2e-126 454.5 314 70.1
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 9.2e-126 454.5 337 67.4
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.2e-125 454.1 330 67.3
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.2e-125 454.1 337 68.5
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 5.9e-125 451.8 312 71.5
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 7.8e-125 451.4 333 68.2
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.3e-124 450.7 339 67.3
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.7e-124 450.3 331 71.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.9e-124 449.5 328 66.8
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.9e-124 449.1 320 72.5
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.9e-124 449.1 340 65.9
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 8.6e-124 448.0 321 69.5
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 4.3e-123 445.7 337 65.3
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 5.6e-123 445.3 327 67.3
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.1e-122 443.4 342 65.5
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 2.1e-122 443.4 337 65.6
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-122 443.4 365 63.3
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.8e-122 443.0 323 67.8
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.3e-121 439.9 337 64.4
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 4.0e-121 439.1 309 72.2
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.8e-121 438.3 337 66.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.8e-121 438.3 337 66.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.2e-120 437.6 338 64.2
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.6e-120 436.4 334 71.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 3.4e-120 436.0 338 69.5
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 4.4e-120 435.6 338 67.8
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.2e-119 433.3 310 71.9
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.7e-119 432.6 309 68.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 3.7e-119 432.6 334 68.6
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.7e-119 432.6 309 70.2
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 6.4e-119 431.8 314 70.7
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.1e-118 431.0 309 71.5
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.9e-118 430.3 314 70.4
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.4e-118 429.9 317 70.0
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 9.2e-118 427.9 338 64.5
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.2e-117 427.6 323 66.3
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.6e-117 427.2 337 66.8
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.5e-117 426.0 320 69.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.0e-116 424.5 338 69.5
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.7e-116 423.7 316 71.5
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 2.3e-116 423.3 311 66.6
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.5e-115 419.9 342 69.0
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.2e-114 417.5 317 66.6
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 8.0e-114 414.8 310 67.1
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.1e-113 414.5 331 68.3
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 5.2e-113 412.1 330 63.3
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 8.9e-113 411.4 337 66.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.5e-112 410.6 319 67.7
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 2.0e-112 410.2 294 70.1
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 5.8e-112 408.7 317 65.0
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.7e-111 407.1 315 64.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.9e-111 406.4 312 64.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.4e-110 403.3 255 75.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 5.4e-110 402.1 308 69.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-109 401.0 328 67.7
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 2.1e-109 400.2 294 69.0
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.5e-109 399.4 318 67.3
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.0e-108 397.9 323 67.2
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.3e-108 396.7 301 65.4
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 3.0e-108 396.4 318 63.5
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 6.6e-108 395.2 286 68.5
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.2e-106 391.0 331 66.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-106 390.6 290 68.3
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 8.9e-105 384.8 297 69.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.5e-104 384.0 350 57.4
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.3e-103 378.3 317 66.6
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 9.2e-102 374.8 314 63.4
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.1e-101 373.6 299 70.2
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 6.0e-101 372.1 291 64.6
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.0e-100 371.3 317 60.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.3e-100 370.9 294 66.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.0e-100 369.8 259 73.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.5e-99 367.5 322 65.2
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 3.3e-99 366.3 320 58.1
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 4.3e-99 365.9 295 64.7
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.4e-97 360.9 321 63.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.7e-95 354.0 219 78.5
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.8e-95 352.8 294 63.6
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 6.0e-93 345.5 270 71.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 3.9e-92 342.8 322 60.2
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.3e-90 337.8 220 73.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.2e-88 331.3 236 68.6
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 6.6e-84 315.5 335 49.9
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.3e-83 312.8 279 58.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.6e-82 310.8 259 61.4
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.1e-81 306.6 230 68.3
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.0e-81 305.1 262 60.3
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 6.0e-77 292.4 230 66.1
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.8e-74 283.5 229 63.8
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.7e-71 274.2 272 59.9
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 8.7e-68 261.9 295 51.9
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.3e-67 259.6 140 90.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.6e-66 257.7 158 76.6
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 4.8e-66 256.1 271 51.7
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.1e-65 253.4 212 63.7
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.5e-64 251.1 249 56.6
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.6e-64 250.4 233 54.1
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.5e-64 249.6 213 58.7
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 6.5e-63 245.7 177 63.3
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.1e-60 236.1 222 57.2
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.1e-60 236.1 222 57.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.3e-59 233.4 223 56.5
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.6e-58 231.1 189 64.6
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 3.1e-57 226.9 233 55.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.7e-55 221.1 236 49.2
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 4.2e-54 216.5 195 61.5
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 6.1e-53 212.6 227 52.9
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 4.1e-49 199.9 245 50.2
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 6.9e-49 199.1 136 70.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 8.5e-47 192.2 143 67.1
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.3e-44 184.1 235 45.5
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 4.4e-43 179.9 114 78.9
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 8.5e-39 165.6 205 41.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 4.2e-38 163.3 150 52.7
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.1e-35 155.2 161 48.4
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 4.8e-34 149.8 186 48.9
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 8.2e-34 149.1 175 48.0
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 8.2e-34 149.1 175 48.0
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 8.2e-34 149.1 272 46.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-33 148.3 165 49.7
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-33 148.3 113 58.4
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 9.4e-30 135.6 209 37.8
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 8.8e-28 129.0 82 76.8
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-27 128.6 119 59.7
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.4e-25 120.9 82 75.6
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.3e-23 115.2 174 46.6
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 2.2e-23 114.4 71 66.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 8.5e-23 112.5 71 64.8
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.4e-22 109.0 99 50.5
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.2e-21 108.6 71 60.6
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 4.7e-21 106.7 70 64.3
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 6.1e-21 106.3 71 62.0
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 8.0e-21 105.9 71 63.4
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 2.3e-20 104.4 71 60.6
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 2.3e-20 104.4 71 60.6
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 6.8e-20 102.8 70 55.7
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 8.8e-20 102.4 109 55.0
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 8.8e-20 102.4 307 28.3
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.7e-18 98.2 76 55.3
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.7e-18 98.2 76 55.3
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.0e-15 89.0 69 55.1
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.0e-15 89.0 69 55.1
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 3.8e-15 87.0 176 38.1
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.6e-14 83.2 79 50.6
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 5.6e-14 83.2 112 39.3
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.3e-12 77.8 102 48.0
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.0e-11 74.7 91 49.5
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.3e-07 62.0 87 49.4
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 1.7e-07 61.6 70 47.1
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 3.0e-07 60.8 71 50.7
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 4.3e-06 57.0 136 32.4
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.3e-06 56.2 87 43.7


User provided reference genes

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