Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.1e-96 356.7 186 100.0
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.5e-74 281.6 138 99.3
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.5e-74 281.6 138 99.3
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 7.6e-74 280.8 137 99.3
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 2.9e-73 278.9 135 100.0
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 2.9e-73 278.9 135 100.0
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 5.5e-72 274.6 135 98.5
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 5.5e-72 274.6 135 98.5
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.2e-71 273.5 138 95.7
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.7e-71 272.3 132 100.0
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-70 269.6 132 99.2
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 6.7e-70 267.7 138 94.9
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 6.7e-70 267.7 138 92.8
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 6.7e-70 267.7 138 92.8
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 8.7e-70 267.3 143 93.0
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.3e-69 265.4 138 92.0
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 3.3e-69 265.4 147 86.4
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 3.3e-69 265.4 138 92.0
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 4.3e-69 265.0 138 94.9
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 5.7e-69 264.6 138 92.8
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 5.7e-69 264.6 139 93.5
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 7.4e-69 264.2 139 92.8
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 9.7e-69 263.8 139 92.8
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.7e-69 263.8 139 92.8
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.7e-69 263.8 139 92.8
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 9.7e-69 263.8 139 92.8
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 9.7e-69 263.8 139 92.8
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.3e-68 263.5 139 92.8
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.3e-68 263.5 146 88.4
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.3e-68 263.5 139 92.1
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.6e-68 263.1 138 91.3
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.2e-68 262.7 139 92.1
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.2e-68 262.7 139 92.1
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.8e-68 262.3 138 92.0
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.8e-68 262.3 139 92.8
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.7e-68 261.9 139 93.5
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 3.7e-68 261.9 138 89.9
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.7e-68 261.9 139 92.8
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.7e-68 261.9 139 91.4
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 4.8e-68 261.5 153 85.6
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.3e-68 261.2 138 89.1
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.3e-68 261.2 138 89.1
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.1e-67 260.4 137 90.5
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.1e-67 260.4 137 90.5
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-67 260.4 139 90.6
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.4e-67 260.0 142 89.4
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.4e-67 260.0 139 91.4
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.4e-67 260.0 139 90.6
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.4e-67 260.0 139 90.6
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.4e-67 260.0 139 90.6
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.4e-67 260.0 139 89.9
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 1.4e-67 260.0 139 90.6
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 1.4e-67 260.0 139 91.4
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.4e-67 260.0 135 91.9
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.8e-67 259.6 138 90.6
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 2.4e-67 259.2 140 90.7
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.4e-67 259.2 140 88.6
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 3.1e-67 258.8 139 89.9
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 3.1e-67 258.8 139 89.9
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 3.1e-67 258.8 140 90.0
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 3.1e-67 258.8 139 89.9
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.1e-67 258.8 135 91.1
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.1e-67 258.8 138 91.3
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 3.1e-67 258.8 139 89.2
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 3.1e-67 258.8 139 89.9
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.1e-67 258.5 137 90.5
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.1e-67 258.5 149 85.2
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 5.3e-67 258.1 139 88.5
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 5.3e-67 258.1 135 91.1
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 6.9e-67 257.7 135 91.1
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 6.9e-67 257.7 139 89.2
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.9e-67 257.7 143 86.7
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-66 256.9 137 90.5
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.2e-66 256.9 139 89.2
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 1.2e-66 256.9 142 88.7
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.5e-66 256.5 144 87.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.5e-66 256.5 143 88.1
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.0e-66 256.1 139 87.8
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.0e-66 256.1 139 87.8
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.0e-66 256.1 139 87.8
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.0e-66 256.1 139 87.8
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-66 256.1 134 91.0
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.0e-66 256.1 140 89.3
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.0e-66 256.1 139 87.8
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 2.6e-66 255.8 134 90.3
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 2.6e-66 255.8 134 90.3
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.4e-66 255.4 138 89.9
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.4e-66 255.4 136 89.7
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.4e-66 255.4 136 89.7
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.5e-66 255.0 140 87.9
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.5e-66 255.0 135 89.6
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.5e-66 255.0 139 87.1
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.9e-66 254.6 135 89.6
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 5.9e-66 254.6 135 89.6
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 5.9e-66 254.6 140 87.9
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 5.9e-66 254.6 134 89.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 7.7e-66 254.2 131 92.4
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.0e-65 253.8 135 88.9
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.0e-65 253.8 135 88.1
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-65 253.4 135 88.1
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.7e-65 253.1 161 79.5
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.2e-65 252.7 139 86.3
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 2.2e-65 252.7 142 84.5
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.9e-65 252.3 145 84.1
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 2.9e-65 252.3 139 86.3
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 2.9e-65 252.3 139 86.3
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 2.9e-65 252.3 135 87.4
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 3.8e-65 251.9 134 89.6
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.0e-65 251.5 136 87.5
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 2.5e-64 249.2 129 92.2
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.2e-64 248.8 131 90.8
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.2e-64 248.4 146 82.2
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.2e-64 248.4 139 87.1
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 5.5e-64 248.1 135 87.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 7.2e-64 247.7 136 86.0
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 7.2e-64 247.7 135 87.4
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 7.2e-64 247.7 135 87.4
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 9.4e-64 247.3 131 89.3
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.1e-63 246.1 141 86.5
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.7e-63 245.7 130 90.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.7e-63 245.7 130 90.0
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.6e-63 245.0 132 87.9
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 6.1e-63 244.6 133 89.5
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 6.1e-63 244.6 129 89.9
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 7.9e-63 244.2 127 90.6
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.0e-62 243.8 139 84.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.0e-62 243.8 129 90.7
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.0e-62 243.8 128 90.6
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.0e-62 243.8 131 88.5
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.8e-62 243.0 133 86.5
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.3e-62 242.7 131 86.3
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.3e-62 242.7 128 90.6
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.0e-62 242.3 127 91.3
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 3.0e-62 242.3 136 86.0
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 5.1e-62 241.5 132 88.6
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 6.7e-62 241.1 131 87.0
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 6.7e-62 241.1 128 89.8
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 4.3e-61 238.4 149 78.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 7.4e-61 237.7 141 83.7
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.7e-60 236.5 131 86.3
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 2.9e-57 225.7 119 90.8
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 2.3e-54 216.1 135 80.0
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 4.4e-53 211.8 132 71.2
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 5.7e-53 211.5 132 81.1
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.8e-52 209.1 197 57.9
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 2.8e-52 209.1 152 69.7
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.4e-51 206.1 132 69.7
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.0e-49 200.7 138 70.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.5e-45 186.8 115 74.8
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.8e-44 182.6 131 70.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.1e-43 178.7 103 81.6
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.9e-41 172.6 87 93.1
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 2.7e-39 166.0 90 87.8
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 4.7e-39 165.2 102 85.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 1.0e-38 164.1 90 86.7
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.8e-38 163.3 90 87.8
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 6.7e-38 161.4 82 91.5
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 4.8e-36 155.2 83 84.3
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 3.5e-34 149.1 132 61.4
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 4.0e-30 135.6 74 85.1
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 4.1e-27 125.6 68 88.2
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.4e-27 125.2 71 85.9
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.5e-26 122.1 71 84.5
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.3e-25 119.8 71 83.1
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.5e-24 117.1 80 75.0
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.1e-23 113.2 58 93.1
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 8.9e-14 81.3 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 3.2e-11 72.8 53 66.0
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 4.3e-08 62.4 32 90.6


User provided reference genes

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