Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 0.0e+00 1263.1 619 100.0
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 0.0e+00 1238.8 619 98.1
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 0.0e+00 1100.5 626 87.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 2.1e-309 1065.1 635 84.4
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.0e-303 1046.2 628 83.0
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.6e-298 1028.9 627 81.3
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.6e-293 1012.3 632 80.1
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 8.8e-292 1006.5 611 81.2
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 2.4e-289 998.4 633 78.8
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.5e-288 994.2 632 79.3
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 2.2e-287 991.9 575 83.7
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 9.4e-286 986.5 575 83.8
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 3.0e-284 981.5 627 77.5
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 9.7e-283 976.5 615 78.0
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.2e-280 969.5 607 77.1
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 2.9e-279 964.9 597 78.1
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.5e-278 962.6 577 80.1
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.9e-278 962.2 607 76.6
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 3.2e-278 961.4 643 73.6
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.6e-277 959.1 649 73.3
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.1e-277 958.7 653 72.7
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.8e-276 955.7 650 74.0
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.8e-276 955.7 635 74.5
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 2.3e-276 955.3 645 73.6
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.3e-276 955.3 612 75.8
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 3.0e-276 954.9 650 73.8
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 4.0e-276 954.5 575 79.1
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.0e-276 954.5 639 73.9
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 5.2e-276 954.1 573 79.2
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 8.8e-276 953.4 594 77.8
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.6e-275 951.8 579 78.8
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.6e-275 951.8 584 78.3
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 2.6e-275 951.8 656 73.3
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 4.4e-275 951.0 639 73.6
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 7.5e-275 950.3 642 73.2
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.3e-274 949.5 637 73.5
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.7e-274 949.1 655 73.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 6.3e-274 947.2 585 77.8
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 8.2e-274 946.8 564 79.4
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 1.8e-273 945.7 652 73.0
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.8e-273 945.7 593 77.2
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.4e-273 945.3 644 72.2
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 2.4e-273 945.3 640 73.4
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 3.1e-273 944.9 566 79.7
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 5.3e-273 944.1 584 78.1
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.0e-272 942.2 643 72.6
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.7e-272 941.8 621 74.4
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 3.5e-272 941.4 641 72.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 3.5e-272 941.4 656 71.0
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.5e-272 941.0 642 72.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.7e-272 940.3 639 72.9
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.0e-271 939.9 576 78.1
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.3e-271 939.5 561 79.5
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.7e-271 939.1 671 71.2
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 2.2e-271 938.7 585 76.9
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.2e-271 938.7 598 75.9
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 8.5e-271 936.8 643 72.8
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.5e-270 936.0 577 77.6
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.9e-270 935.6 580 77.1
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.9e-270 935.6 586 76.8
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.5e-270 935.3 574 78.0
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 2.5e-270 935.3 598 75.4
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.2e-270 934.9 574 77.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.6e-269 932.6 580 77.1
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.1e-269 932.2 634 71.8
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 2.7e-269 931.8 633 73.5
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 3.6e-269 931.4 578 76.8
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 6.1e-269 930.6 649 71.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 8.0e-269 930.2 586 76.6
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 8.0e-269 930.2 618 73.3
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.4e-268 929.5 698 68.2
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.4e-268 929.5 629 73.1
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 5.2e-268 927.5 573 77.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 8.8e-268 926.8 621 71.8
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.2e-267 926.4 580 76.4
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-266 922.2 626 72.8
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 4.8e-266 921.0 644 70.7
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 8.3e-266 920.2 621 71.0
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.1e-265 919.8 581 77.3
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.4e-265 919.5 563 78.3
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.4e-265 919.5 615 71.5
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.8e-265 919.1 582 75.1
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.6e-264 916.0 612 72.1
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 3.5e-264 914.8 594 74.7
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 5.9e-264 914.1 580 74.8
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.7e-263 912.5 545 78.5
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 3.8e-263 911.4 616 72.1
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 3.8e-263 911.4 531 80.8
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 8.5e-263 910.2 615 71.1
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.1e-262 909.8 616 71.4
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.5e-262 909.4 583 74.1
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 7.2e-262 907.1 576 74.7
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 7.2e-262 907.1 543 78.3
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 9.4e-262 906.7 576 74.7
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.2e-261 906.4 624 71.0
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 2.7e-261 905.2 624 71.2
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 2.7e-261 905.2 628 71.3
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 6.8e-260 900.6 548 77.0
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 6.8e-260 900.6 528 81.1
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 2.2e-258 895.6 612 72.9
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 2.2e-258 895.6 736 63.6
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.4e-257 892.1 582 72.9
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.8e-252 875.9 599 71.1
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.3e-252 875.5 616 69.8
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 4.0e-252 874.8 616 69.6
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 3.4e-251 871.7 545 76.0
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 7.5e-251 870.5 618 69.3
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.3e-250 869.8 567 73.9
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.0e-244 850.1 532 75.2
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.0e-244 850.1 570 73.7
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.3e-242 843.2 551 72.4
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 3.9e-239 831.6 628 65.8
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 7.3e-238 827.4 633 67.1
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.3e-231 806.6 540 74.8
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.2e-229 800.0 600 68.5
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 4.4e-227 791.6 584 64.0
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 3.3e-222 775.4 536 70.7
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 3.6e-221 771.9 576 64.1
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 8.1e-221 770.8 549 66.5
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 8.1e-221 770.8 448 82.4
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 7.6e-219 764.2 448 81.0
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 9.6e-214 747.3 439 80.2
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.5e-206 723.4 511 68.3
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 2.9e-186 656.0 446 70.6
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.5e-186 654.8 497 66.6
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 3.7e-181 639.0 538 58.4
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.1e-164 584.3 361 76.2
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 8.2e-157 558.1 344 77.0
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 3.8e-154 549.3 561 53.7
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.1e-145 521.2 555 49.5
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 2.1e-144 516.9 369 70.7
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.2e-134 484.6 417 61.6
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 2.2e-133 480.3 536 51.5
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 1.8e-132 477.2 280 78.9
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.3e-129 466.5 278 78.8
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 8.9e-127 458.4 327 71.3
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 8.3e-117 425.2 568 43.3
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.6e-104 384.4 286 64.3
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.8e-96 356.3 643 36.1
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 3.0e-82 310.5 263 63.5
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.6e-80 304.7 592 35.8
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 2.1e-80 304.3 568 35.9
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 2.1e-80 304.3 184 75.5
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.6e-78 297.4 188 71.3
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 1.9e-76 291.2 179 76.5
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.0e-74 283.9 579 34.2
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.0e-74 283.9 179 74.9
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 6.3e-72 276.2 167 77.8
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 1.0e-66 258.8 603 32.8
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.4e-60 238.4 589 30.6
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.9e-59 232.6 140 77.1
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.8e-58 231.5 321 43.0
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 5.7e-57 226.5 155 67.7
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 3.3e-49 200.7 120 83.3
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.0e-45 186.8 117 75.2
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 4.7e-43 180.3 104 82.7
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 4.1e-39 167.2 149 57.0
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.7e-38 164.5 118 66.1
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 7.7e-38 162.9 107 72.0
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.7e-30 137.9 106 63.2
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.0e-29 136.0 77 79.2
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.3e-29 135.6 90 71.1
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 8.0e-27 126.3 67 85.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.0e-26 125.9 65 89.2
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-23 115.5 137 46.0
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 5.6e-20 103.6 64 76.6
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 4.7e-11 73.9 120 40.8
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.8e-10 70.1 54 64.8
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 8.9e-10 69.7 51 64.7
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 4.4e-09 67.4 59 55.9
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 7.5e-09 66.6 70 48.6
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.4e-07 62.4 38 68.4


User provided reference genes

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