Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g034310 Solanum pennellii HOM05D000561 ORTHO05D016997 1.9e-33 145.2 69 100.0
Nitab4.5_0004438g0020 Nicotiana tabacum HOM05D016002 ORTHO05D016997 1.2e-19 99.4 66 68.2
Nitab4.5_0000570g0030 Nicotiana tabacum HOM05D016002 ORTHO05D016997 3.2e-17 91.3 66 65.2
Peaxi162Scf00086g00327 Petunia axillaris HOM05D016002 ORTHO05D016997 6.4e-10 67.0 50 58.0
Os03g0569900 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 3.2e-09 64.7 66 43.9
vmacro09721 Vaccinium macrocarpon HOM05D000561 ORTHO05D000514 4.2e-09 64.3 66 47.0
Zm00001eb219820 Zea mays HOM05D000561 ORTHO05D000514 4.2e-09 64.3 66 45.5
MSTRG.14433 Avicennia marina HOM05D000561 ORTHO05D000514 1.6e-08 62.4 66 47.0
SEGI_19905 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 1.6e-08 62.4 66 45.5
CSS0015791 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 2.1e-08 62.0 66 47.0
CSS0025985 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 2.1e-08 62.0 66 47.0
CSS0036243 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 2.1e-08 62.0 66 47.0
RhsimUnG0251200 Rhododendron simsii HOM05D000561 ORTHO05D000514 2.1e-08 62.0 66 45.5
Lj1C871T6 Lonicera japonica HOM05D000561 ORTHO05D000514 4.6e-08 60.8 66 45.5
Oeu042236.1 Olea europaea HOM05D016002 ORTHO05D016997 4.6e-08 60.8 67 43.3
DCAR_010053 Daucus carota HOM05D000561 ORTHO05D000514 6.0e-08 60.5 66 45.5
Dinv22269 Davidia involucrata HOM05D000561 ORTHO05D000514 6.0e-08 60.5 66 45.5
Dinv04525 Davidia involucrata HOM05D000561 ORTHO05D000514 1.0e-07 59.7 66 43.9
Medtr2g022950 Medicago truncatula HOM05D000561 ORTHO05D000514 1.8e-07 58.9 66 47.0
arahy.Tifrunner.gnm1.ann1.L9HQYR Arachis hypogaea HOM05D000561 ORTHO05D000514 2.3e-07 58.5 66 45.5
ECA236G1057 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.3e-07 58.5 66 42.4
Lalb_Chr20g0118581 Lupinus albus HOM05D000561 ORTHO05D000514 2.3e-07 58.5 66 45.5
arahy.Tifrunner.gnm1.ann1.W85N9Z Arachis hypogaea HOM05D000561 ORTHO05D000514 3.0e-07 58.2 66 45.5
CDE10G0778 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 3.0e-07 58.2 66 40.9
SGA_v2.0_scaffold9G05076 Striga asiatica HOM05D000561 ORTHO05D000514 3.0e-07 58.2 66 42.4
VMungo0540G1994 Vigna mungo HOM05D000561 ORTHO05D000514 3.0e-07 58.2 66 45.5
Ca_00619_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 3.9e-07 57.8 66 43.9
Duzib248G1424 Durio zibethinus HOM05D000561 ORTHO05D000514 3.9e-07 57.8 67 40.3
Peaxi162Scf00016g01744 Petunia axillaris HOM05D000561 ORTHO05D000514 3.9e-07 57.8 66 45.5
SEGI_29644 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 3.9e-07 57.8 66 37.9
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.1e-07 57.4 66 42.4
Cc05_g13760 Coffea canephora HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 45.5
Migut.H01831 Erythranthe guttata HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 42.4
Glyma.07G210800 Glycine max HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 40.9
Glyma.13G205600 Glycine max HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 43.9
Lalb_Chr15g0087531 Lupinus albus HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 43.9
Phvul.006G150400 Phaseolus vulgaris HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 43.9
QL01p004975 Quercus lobata HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 39.4
VMungo0251G0139 Vigna mungo HOM05D000561 ORTHO05D000514 5.1e-07 57.4 66 40.9
Actinidia35338 Actinidia chinensis HOM05D000561 ORTHO05D000514 6.7e-07 57.0 66 43.9
CiPaw.09G090300 Carya illinoinensis HOM05D000561 ORTHO05D000514 6.7e-07 57.0 66 42.4
Dinv04524 Davidia involucrata HOM05D000561 ORTHO05D000514 6.7e-07 57.0 66 42.4
Glyma.02G134400 Glycine max HOM05D000561 ORTHO05D000514 6.7e-07 57.0 66 40.9
Lalb_Chr18g0056291 Lupinus albus HOM05D000561 ORTHO05D000514 6.7e-07 57.0 66 43.9
TPR.G7646 Trifolium pratense HOM05D000561 ORTHO05D000514 6.7e-07 57.0 66 45.5
CiPaw.10G069900 Carya illinoinensis HOM05D000561 ORTHO05D000514 8.7e-07 56.6 66 40.9
Ca_14896_v3 Cicer arietinum L. HOM05D000280 ORTHO05D000514 8.7e-07 56.6 66 42.4
Glyma.15G106900 Glycine max HOM05D000561 ORTHO05D000514 8.7e-07 56.6 66 43.9
HanXRQChr11g0336221 Helianthus annuus HOM05D000561 ORTHO05D000514 8.7e-07 56.6 66 40.9
Psat1g181680 Pisum sativum HOM05D000561 ORTHO05D000514 8.7e-07 56.6 66 43.9
SEGI_02787 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 8.7e-07 56.6 66 42.4
PGSC0003DMG400025900 Solanum tuberosum HOM05D000561 ORTHO05D000514 8.7e-07 56.6 66 40.9
Zm00001eb118340 Zea mays HOM05D000561 ORTHO05D000514 8.7e-07 56.6 66 39.4
Manes.17G038000 Manihot esculenta HOM05D000561 ORTHO05D000514 1.1e-06 56.2 66 43.9
Lj4g0014396 Lotus japonicus HOM05D000561 ORTHO05D000514 1.5e-06 55.8 66 39.4
PGR119G1727 Punica granatum HOM05D000561 ORTHO05D000514 1.5e-06 55.8 66 40.9
SEGI_14452 Sequoiadendron giganteum HOM05D000561 ORTHO05D000514 1.5e-06 55.8 66 40.9
Ah.14g088050 Amaranthus hybridus HOM05D000561 ORTHO05D000514 1.9e-06 55.5 66 42.4
Ca_19894_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 1.9e-06 55.5 66 42.4
Eucgr.J00778 Eucalyptus grandis HOM05D000561 ORTHO05D000514 1.9e-06 55.5 66 40.9
Glyma.17G014800 Glycine max HOM05D000561 ORTHO05D000514 1.9e-06 55.5 66 43.9
Lj6g0011746 Lotus japonicus HOM05D000561 ORTHO05D000514 1.9e-06 55.5 66 42.4
Os04g0625800 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 1.9e-06 55.5 66 37.9
HPP92_016294 Vanilla planifolia HOM05D000561 ORTHO05D000514 1.9e-06 55.5 66 39.4
arahy.Tifrunner.gnm1.ann1.3CX1XJ Arachis hypogaea HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 42.4
arahy.Tifrunner.gnm1.ann1.FRV4YZ Arachis hypogaea HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 39.4
arahy.Tifrunner.gnm1.ann1.GH9K5U Arachis hypogaea HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 39.4
arahy.Tifrunner.gnm1.ann1.X24ZF9 Arachis hypogaea HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 42.4
CDE05G3332 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 42.4
Lj3g0012879 Lotus japonicus HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 42.4
Medtr2g097960 Medicago truncatula HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 40.9
Nitab4.5_0004334g0010 Nicotiana tabacum HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 39.4
Oeu007584.1 Olea europaea HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 42.4
Peaxi162Scf00595g00310 Petunia axillaris HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 43.9
Phvul.003G294800 Phaseolus vulgaris HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 39.4
Psat4g007360 Pisum sativum HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 43.9
Solyc01g108500.4 Solanum lycopersicum HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 39.4
Sopen01g050710 Solanum pennellii HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 39.4
PGSC0003DMG400022220 Solanum tuberosum HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 42.4
GSVIVG01025280001 Vitis vinifera HOM05D000561 ORTHO05D000514 2.5e-06 55.1 66 37.9
ATR0752G101 Amborella trichopoda HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 37.9
CANSAT54G1581 Cannabis sativa HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 39.4
Cc02_g18600 Coffea canephora HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 40.9
Glyma.07G259500 Glycine max HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 42.4
Glyma.11G133200 Glycine max HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 40.9
Glyma.12G057300 Glycine max HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 40.9
Lj8A169G90 Lonicera japonica HOM05D000561 ORTHO05D000514 3.3e-06 54.7 51 47.1
Oeu020118.2 Olea europaea HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 42.4
Phvul.003G077700 Phaseolus vulgaris HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 42.4
Solyc10g050860.3 Solanum lycopersicum HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 42.4
Sopen10g022430 Solanum pennellii HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 42.4
TPR.G10534 Trifolium pratense HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 39.4
TPR.G6890 Trifolium pratense HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 39.4
VMungo1215G2483 Vigna mungo HOM05D000561 ORTHO05D000514 3.3e-06 54.7 66 42.4
CDE05G1948 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 4.3e-06 54.3 66 42.4
Duzib052G0709 Durio zibethinus HOM05D000561 ORTHO05D000514 4.3e-06 54.3 66 40.9
Duzib213G0335 Durio zibethinus HOM05D000561 ORTHO05D000514 4.3e-06 54.3 66 45.5
Eucgr.G01492 Eucalyptus grandis HOM05D000561 ORTHO05D000514 4.3e-06 54.3 66 40.9
Lalb_Chr07g0177291 Lupinus albus HOM05D000561 ORTHO05D000514 4.3e-06 54.3 66 42.4
Psat5g286480 Pisum sativum HOM05D000561 ORTHO05D000514 4.3e-06 54.3 66 39.4
Cpa.g.sc62.34 Carica papaya HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 40.9
Cfa000238 Carpinus fangiana HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 40.9
CDE02G4501 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 40.9
Ca_18667_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 39.4
Haze_06784 Corylus avellana HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 40.9
Duzib160G0219 Durio zibethinus HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 42.4
FvH4_3g22530 Fragaria vesca HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 42.4
FAN11G0522 Fragaria x ananassa HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 42.4
FAN16G1297 Fragaria x ananassa HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 42.4
FAN21G2051 Fragaria x ananassa HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 42.4
FAN25G2394 Fragaria x ananassa HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 42.4
Lsat_1_v5_gn_7_108681 Lactuca sativa HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 37.9
Lj4g0014654 Lotus japonicus HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 40.9
Lalb_Chr05g0219041 Lupinus albus HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 39.4
Manes.05G203200 Manihot esculenta HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 40.9
Os08g0190200 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 43.9
Phvul.011G059300 Phaseolus vulgaris HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 39.4
SalBow8G1719 Salvia bowleyana HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 42.4
Thecc.06G218500 Theobroma cacao HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 43.9
VMungo1127G1920 Vigna mungo HOM05D000561 ORTHO05D000514 5.6e-06 53.9 66 39.4
ATR0193G004 Amborella trichopoda HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
AagrBONN_evm.TU.Sc2ySwM_344.2441 Anthoceros agrestis HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
CANSAT25G2633 Cannabis sativa HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 40.9
Cpa.g.sc198.41 Carica papaya HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 42.4
Cpa.g.sc97.13 Carica papaya HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 45.5
CiPaw.05G053800 Carya illinoinensis HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 42.4
COL.COLO4_24888 Corchorus olitorius HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
COL.COLO4_31755 Corchorus olitorius HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 42.4
FvH4_2g06660 Fragaria vesca HOM05D000561 ORTHO05D000514 7.4e-06 53.5 67 41.8
FAN15G2784 Fragaria x ananassa HOM05D000561 ORTHO05D000514 7.4e-06 53.5 67 41.8
FAN24G1497 Fragaria x ananassa HOM05D000561 ORTHO05D000514 7.4e-06 53.5 67 41.8
FAN27G2349 Fragaria x ananassa HOM05D000561 ORTHO05D000514 7.4e-06 53.5 67 41.8
Gohir.A10G013600 Gossypium hirsutum HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 42.4
Gohir.A13G039100 Gossypium hirsutum HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
Gohir.D10G013500 Gossypium hirsutum HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 42.4
Gohir.D13G037600 Gossypium hirsutum HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
Gorai.008G025400 Gossypium raimondii HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
Gorai.011G015300 Gossypium raimondii HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 42.4
Gorai.013G042300 Gossypium raimondii HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
Nitab4.5_0001899g0030 Nicotiana tabacum HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 37.9
PSO017G6713 Papaver somniferum HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 37.9
PGR119G1069 Punica granatum HOM05D000561 ORTHO05D000514 7.4e-06 53.5 66 39.4
RcHm_v2.0_Chr6g0258701 Rosa chinensis HOM05D000561 ORTHO05D000514 7.4e-06 53.5 67 41.8
Zm00001eb239350 Zea mays HOM05D000561 ORTHO05D000514 7.4e-06 53.5 67 38.8
Atru.chr5.2771 Acer truncatum HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 39.4
AL6G30840 Arabidopsis lyrata HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 43.9
AT5G19350 Arabidopsis thaliana HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 43.9
CSS0034072 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 37.9
CiPaw.14G119600 Carya illinoinensis HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 37.9
HanXRQChr05g0129581 Helianthus annuus HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 40.9
MD10G1090700 Malus domestica HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 39.4
Manes.15G072700 Manihot esculenta HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 42.4
Solyc07g064510.3 Solanum lycopersicum HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 40.9
Sopen07g032710 Solanum pennellii HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 40.9
TAR376G0108 Trochodendron aralioides HOM05D000561 ORTHO05D001366 9.6e-06 53.1 66 36.4
TAR376G0542 Trochodendron aralioides HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 37.9
TAR636G2461 Trochodendron aralioides HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 37.9
GSVIVG01037634001 Vitis vinifera HOM05D000561 ORTHO05D000514 9.6e-06 53.1 66 42.4
Zm00001eb315240 Zea mays HOM05D000561 ORTHO05D000514 9.6e-06 53.1 67 40.3


User provided reference genes

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