Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 1.3e-63 247.3 262 100.0
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.0e-55 221.1 262 95.0
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 2.7e-48 196.4 262 82.8
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.3e-47 194.1 262 83.6
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 2.3e-47 193.4 262 85.5
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 3.9e-47 192.6 260 83.5
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 6.6e-47 191.8 262 84.7
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 6.6e-47 191.8 262 84.7
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 1.9e-46 190.3 262 87.4
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 2.5e-46 189.9 262 82.8
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 4.3e-46 189.1 262 84.0
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 6.1e-45 185.3 262 87.0
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 6.1e-45 185.3 262 85.9
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.4e-44 184.1 262 86.3
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 4.0e-44 182.6 299 54.5
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 4.0e-44 182.6 262 86.3
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 5.2e-44 182.2 262 85.9
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 8.9e-44 181.4 260 85.4
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 1.2e-43 181.0 262 85.1
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 2.0e-43 180.3 262 85.1
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 1.3e-42 177.6 261 85.1
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 2.2e-42 176.8 262 85.1
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 2.9e-42 176.4 262 84.7
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 2.9e-42 176.4 261 84.7
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.7e-42 176.0 262 84.0
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.7e-42 176.0 262 84.0
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 3.7e-42 176.0 262 84.0
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 4.9e-42 175.6 262 84.4
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 3.2e-41 172.9 262 83.2
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 4.1e-41 172.6 262 85.9
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 4.1e-41 172.6 262 84.0
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 5.4e-41 172.2 262 84.0
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 5.4e-41 172.2 262 84.0
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 7.0e-41 171.8 262 84.7
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 7.0e-41 171.8 262 83.2
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 7.0e-41 171.8 260 85.0
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 9.2e-41 171.4 260 83.8
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.2e-40 171.0 260 83.8
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 1.2e-40 171.0 260 83.5
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 1.2e-40 171.0 262 85.9
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 2.0e-40 170.2 262 82.4
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 2.0e-40 170.2 260 83.1
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 2.0e-40 170.2 261 82.8
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 2.7e-40 169.9 262 85.5
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 4.6e-40 169.1 263 83.7
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 1.3e-39 167.5 262 83.6
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 3.0e-39 166.4 263 84.4
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 3.9e-39 166.0 262 82.8
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 3.9e-39 166.0 262 82.8
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 5.0e-39 165.6 262 80.9
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 6.6e-39 165.2 262 80.5
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 1.9e-38 163.7 266 39.8
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 3.3e-38 162.9 262 83.2
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 7.3e-38 161.8 261 80.5
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 7.3e-38 161.8 287 80.1
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 9.5e-38 161.4 262 82.1
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 1.2e-37 161.0 262 80.9
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.2e-37 161.0 262 82.1
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 6.2e-37 158.7 262 81.3
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 6.2e-37 158.7 265 83.8
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 1.1e-36 157.9 262 80.5
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 1.1e-36 157.9 255 83.5
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 1.8e-36 157.1 262 80.5
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 1.8e-36 157.1 262 80.5
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 1.8e-36 157.1 262 80.5
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 2.3e-36 156.8 261 80.8
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 3.1e-36 156.4 262 80.9
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 3.1e-36 156.4 260 80.4
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 4.0e-36 156.0 261 81.2
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 4.0e-36 156.0 260 80.4
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 5.2e-36 155.6 262 81.7
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 5.2e-36 155.6 261 81.2
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 5.8e-35 152.1 261 80.5
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 9.8e-35 151.4 261 79.7
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 9.8e-35 151.4 261 80.8
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 1.7e-34 150.6 261 80.8
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.7e-34 150.6 261 80.8
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 4.9e-34 149.1 261 80.5
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 6.4e-34 148.7 261 80.1
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.1e-33 147.9 262 62.2
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 1.4e-33 147.5 261 79.7
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 1.4e-33 147.5 261 79.7
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 7.1e-33 145.2 261 78.9
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 9.2e-33 144.8 284 62.7
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 9.2e-33 144.8 261 78.9
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.6e-32 144.1 269 80.3
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 2.1e-32 143.7 261 78.5
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 2.1e-32 143.7 261 78.5
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 2.7e-32 143.3 261 78.5
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 3.5e-32 142.9 262 80.2
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 7.8e-32 141.7 269 59.9
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 7.8e-32 141.7 262 79.8
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 4.3e-30 136.0 262 76.3
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.0e-28 129.4 251 79.3
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 5.2e-28 129.0 261 77.0
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 6.8e-28 128.6 231 86.6
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.4e-27 125.9 253 79.4
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 7.6e-27 125.2 64 96.9
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 1.7e-26 124.0 234 83.8
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 2.2e-26 123.6 78 74.4
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 3.7e-26 122.9 337 63.2
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.1e-25 121.3 93 65.6
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 2.4e-25 120.2 262 75.2
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 5.4e-25 119.0 75 77.3
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.2e-24 117.9 236 81.8
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 1.6e-24 117.5 76 76.3
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 1.6e-24 117.5 73 78.1
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 6.0e-24 115.5 63 88.9
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 6.0e-24 115.5 260 72.3
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 1.3e-23 114.4 319 57.7
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 3.0e-23 113.2 268 72.4
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 1.9e-22 110.5 97 60.8
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 7.3e-22 108.6 64 79.7
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 9.6e-22 108.2 63 81.0
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 1.6e-21 107.5 63 81.0
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 2.1e-21 107.1 62 79.0
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 2.8e-21 106.7 63 79.4
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 2.2e-18 97.1 78 61.5
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 3.8e-18 96.3 75 57.3
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 3.8e-18 96.3 63 69.8
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 1.6e-16 90.9 339 52.8
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 7.8e-16 88.6 207 85.5
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.0e-15 88.2 52 78.8
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 6.6e-15 85.5 66 60.6
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 8.7e-15 85.1 73 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 7.3e-14 82.0 61 55.7
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.8e-12 77.4 75 57.3
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 1.5e-11 74.3 260 66.2
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 9.9e-11 71.6 61 52.5
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 2.2e-10 70.5 249 51.0
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 7.1e-09 65.5 60 46.7
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 7.1e-09 65.5 66 48.5
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 9.3e-09 65.1 69 46.4
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.6e-08 64.3 69 46.4
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.6e-08 64.3 69 46.4
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 1.6e-08 64.3 69 46.4
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 2.7e-08 63.5 270 36.3
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 4.6e-08 62.8 69 42.0
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 6.0e-08 62.4 69 44.9
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 6.0e-08 62.4 246 45.5
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 6.0e-08 62.4 68 45.6
QL10p018168 Quercus lobata HOM05D006238 ORTHO05D007458 7.8e-08 62.0 54 51.9
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 2.3e-07 60.5 68 42.6
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 3.0e-07 60.1 60 41.7
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 3.9e-07 59.7 68 42.6
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 5.1e-07 59.3 69 40.6
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 5.1e-07 59.3 71 39.4
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 5.1e-07 59.3 81 39.5
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 5.1e-07 59.3 66 43.9
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 5.1e-07 59.3 78 39.7
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 5.1e-07 59.3 78 39.7
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 6.6e-07 58.9 71 39.4
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 6.6e-07 58.9 69 42.0
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 6.6e-07 58.9 68 42.6
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 6.6e-07 58.9 64 43.8
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 8.7e-07 58.5 66 42.4
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 8.7e-07 58.5 60 40.0
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 1.1e-06 58.2 71 40.8
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 1.1e-06 58.2 69 42.0
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 1.1e-06 58.2 67 40.3
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 1.5e-06 57.8 68 39.7
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 1.9e-06 57.4 66 42.4
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 1.9e-06 57.4 66 42.4
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 2.5e-06 57.0 62 43.5
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 2.5e-06 57.0 68 39.7
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 2.5e-06 57.0 68 44.1
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 2.5e-06 57.0 76 38.2
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 3.3e-06 56.6 70 44.3
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 3.3e-06 56.6 75 38.7
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 3.3e-06 56.6 64 42.2
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 4.3e-06 56.2 63 41.3
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 4.3e-06 56.2 81 35.8
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 4.3e-06 56.2 65 41.5
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 4.3e-06 56.2 31 83.9
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 5.6e-06 55.8 65 41.5
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 5.6e-06 55.8 65 41.5
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 64 39.1
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 7.3e-06 55.5 68 38.2
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 9.6e-06 55.1 63 42.9
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 9.6e-06 55.1 67 41.8
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 9.6e-06 55.1 67 40.3


User provided reference genes

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