Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 4.9e-229 797.3 376 100.0
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 3.3e-225 784.6 376 98.1
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.4e-220 769.2 376 96.0
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.0e-205 719.9 375 87.7
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 5.5e-204 714.1 382 87.2
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.0e-197 693.3 374 86.6
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 3.2e-188 661.8 371 80.1
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 1.4e-186 656.4 371 79.2
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 2.3e-186 655.6 371 78.2
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 6.7e-186 654.1 374 79.1
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 2.0e-185 652.5 374 78.9
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 4.3e-185 651.4 371 79.2
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 4.3e-185 651.4 374 77.8
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 7.4e-185 650.6 376 78.5
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.8e-184 648.7 371 78.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.1e-183 646.7 371 77.9
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.1e-183 646.7 367 79.3
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.1e-183 646.7 373 80.4
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.4e-183 646.4 374 78.6
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.8e-183 646.0 374 78.3
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.8e-183 646.0 375 78.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 9.1e-183 643.7 376 78.7
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.0e-182 642.5 374 79.7
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.6e-182 642.1 372 78.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 3.4e-182 641.7 376 79.3
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 5.9e-182 641.0 371 79.0
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 7.7e-182 640.6 374 77.3
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.7e-181 639.4 409 76.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.7e-181 639.4 371 77.6
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 2.2e-181 639.0 371 77.6
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 6.5e-181 637.5 371 77.4
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 8.5e-181 637.1 365 78.4
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.4e-180 636.3 374 77.8
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.4e-180 636.3 371 77.4
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 3.2e-180 635.2 372 77.7
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 9.4e-180 633.6 371 78.2
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.2e-179 633.3 374 75.4
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.2e-179 633.3 372 77.4
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.1e-179 632.5 374 78.1
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.7e-179 632.1 371 75.5
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.7e-179 632.1 374 78.1
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.7e-179 632.1 372 76.3
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 2.7e-179 632.1 374 76.5
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.7e-179 631.3 371 75.5
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 6.1e-179 630.9 381 75.9
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 6.1e-179 630.9 374 76.5
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 6.1e-179 630.9 374 75.1
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.1e-178 627.9 389 74.0
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 8.8e-178 627.1 374 74.6
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 8.8e-178 627.1 371 76.5
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 2.6e-177 625.5 371 75.5
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.3e-177 625.2 375 75.7
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 3.3e-177 625.2 372 76.1
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 3.3e-177 625.2 371 75.7
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 7.4e-177 624.0 371 75.7
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.8e-176 622.1 371 74.9
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 2.8e-176 622.1 376 74.5
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 6.3e-176 620.9 370 76.2
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 6.3e-176 620.9 365 75.6
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 8.2e-176 620.5 376 74.2
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.1e-175 620.2 371 75.2
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.4e-175 619.8 380 74.7
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.8e-175 619.4 371 74.4
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 5.3e-175 617.8 371 74.4
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 5.3e-175 617.8 374 75.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 5.3e-175 617.8 374 74.1
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 7.0e-175 617.5 371 74.9
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 9.1e-175 617.1 371 74.1
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 9.1e-175 617.1 372 74.7
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.5e-174 616.3 370 75.1
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 2.6e-174 615.5 371 74.7
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 3.5e-174 615.1 370 75.4
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.1e-172 610.1 357 78.2
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 4.2e-172 608.2 370 73.8
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 7.2e-172 607.4 375 72.0
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 3.6e-171 605.1 374 72.7
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.0e-170 603.6 368 74.2
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.0e-170 603.6 369 74.3
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.3e-170 602.4 369 74.5
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 3.9e-170 601.7 369 74.3
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.9e-170 601.7 372 72.8
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 5.2e-170 601.3 373 72.1
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.0e-169 599.4 371 73.9
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.6e-169 599.0 371 73.6
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 4.4e-169 598.2 371 73.3
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 4.4e-169 598.2 385 73.2
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 4.4e-169 598.2 372 73.4
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.3e-168 596.7 371 73.9
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 2.2e-168 595.9 403 68.5
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 2.2e-168 595.9 369 72.4
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.8e-168 595.5 369 73.4
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 3.7e-168 595.1 369 73.4
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 4.8e-168 594.7 369 73.4
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 4.8e-168 594.7 370 73.8
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 8.2e-168 594.0 371 73.3
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.3e-167 591.3 349 77.7
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 3.8e-165 585.1 378 72.2
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 5.5e-164 581.3 457 61.5
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.6e-163 579.7 375 71.2
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 3.0e-162 575.5 371 71.7
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.2e-161 573.5 375 71.2
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 3.7e-160 568.5 426 64.3
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 4.8e-160 568.2 402 66.4
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 3.1e-159 565.5 373 68.6
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 7.0e-159 564.3 369 70.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 3.5e-158 562.0 371 70.6
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.0e-157 560.5 328 75.0
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 3.6e-155 552.0 374 66.8
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 9.8e-153 543.9 369 69.4
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.3e-152 543.5 376 64.6
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.6e-150 536.6 368 66.6
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 2.0e-150 536.2 374 65.2
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.0e-150 536.2 360 67.5
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 6.1e-147 524.6 369 64.5
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 6.8e-146 521.2 308 77.3
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.2e-145 520.4 372 64.5
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 6.6e-141 504.6 418 58.1
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.9e-135 486.5 293 73.0
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 2.5e-132 476.1 384 59.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 4.3e-132 475.3 371 61.7
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.1e-124 450.7 277 74.4
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 3.9e-109 399.1 342 58.5
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 8.7e-109 397.9 385 51.9
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 5.3e-98 362.1 218 74.8
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.9e-96 355.5 229 69.4
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 4.2e-95 352.4 382 47.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 7.9e-94 348.2 381 48.0
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.0e-93 347.8 250 64.0
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.8e-90 337.0 371 46.9
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-89 334.0 219 69.9
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 1.0e-85 321.2 398 44.2
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.5e-79 298.9 196 68.4
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.8e-75 286.6 163 76.1
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 2.9e-72 276.6 170 72.4
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.0e-61 241.5 171 67.3
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 7.2e-47 192.2 476 28.6
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 2.2e-40 170.6 94 78.7
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-35 154.8 129 65.1
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 1.0e-32 145.2 94 70.2
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 2.3e-32 144.1 94 69.1
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 2.3e-32 144.1 76 88.2
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 2.4e-26 124.0 91 63.7
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.5e-23 114.8 340 27.6
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.9e-18 97.8 163 37.4
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 3.9e-16 90.1 43 93.0
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 3.3e-15 87.0 46 82.6
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 2.1e-14 84.3 46 84.8
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 3.1e-13 80.5 46 78.3
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 5.8e-12 76.3 40 80.0
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 4.3e-07 60.1 30 73.3
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 4.7e-06 56.6 28 85.7


User provided reference genes

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