Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g018710 Solanum pennellii HOM05D003402 ORTHO05D003939 1.5e-53 212.6 108 100.0
Sopen06g034020 Solanum pennellii HOM05D003402 ORTHO05D003939 3.4e-26 121.7 66 92.4
PGSC0003DMG400030475 Solanum tuberosum HOM05D003402 ORTHO05D003939 3.4e-26 121.7 66 92.4
ATR0743G241 Amborella trichopoda HOM05D003402 ORTHO05D003939 2.2e-25 119.0 66 87.9
CSS0032042 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 2.2e-25 119.0 68 86.8
CAN.G874.67 Capsicum annuum HOM05D003402 ORTHO05D003939 2.9e-25 118.6 66 89.4
Ciclev10032222m.g Citrus clementina HOM05D003402 ORTHO05D003939 2.9e-25 118.6 66 89.4
Eucgr.K00301 Eucalyptus grandis HOM05D003402 ORTHO05D003939 2.9e-25 118.6 66 89.4
Lalb_Chr15g0082451 Lupinus albus HOM05D003402 ORTHO05D003939 2.9e-25 118.6 66 89.4
Nitab4.5_0006644g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 2.9e-25 118.6 66 89.4
Nitab4.5_0012601g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 2.9e-25 118.6 66 89.4
Aqoxy4G03102 Aquilegia oxysepala HOM05D003402 ORTHO05D003939 3.8e-25 118.2 80 76.2
CSS0009706 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Cpa.g.sc19.128 Carica papaya HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Ciclev10029250m.g Citrus clementina HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
COL.COLO4_07759 Corchorus olitorius HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
DCAR_013538 Daucus carota HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Dinv40893 Davidia involucrata HOM05D000015 ORTHO05D002536 6.5e-25 117.5 66 87.9
Dinv41799 Davidia involucrata HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Duzib170G0574 Durio zibethinus HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Duzib213G0004 Durio zibethinus HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 6.5e-25 117.5 66 87.9
Gohir.D05G386500 Gossypium hirsutum HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Gohir.D13G133300 Gossypium hirsutum HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Gorai.013G149600 Gossypium raimondii HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Lj1P897T22 Lonicera japonica HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Lalb_Chr20g0115311 Lupinus albus HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Thecc.07G005500 Theobroma cacao HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
TWI73G0622 Tripterygium wilfordii HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
vmacro11627 Vaccinium macrocarpon HOM05D003402 ORTHO05D003939 6.5e-25 117.5 66 87.9
Atru.chr1.1993 Acer truncatum HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 87.9
CANSAT01G1535 Cannabis sativa HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
DCAR_023786 Daucus carota HOM05D003402 ORTHO05D003939 8.5e-25 117.1 78 76.9
Hma1.2p1_0193F.1_g084090 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
Hma1.2p1_2995F.1_g331420 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
Lj6g0015324 Lotus japonicus HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 87.9
MD03G1039400 Malus domestica HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
MD11G1039900 Malus domestica HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
Manes.03G143100 Manihot esculenta HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 87.9
Manes.05G206500 Manihot esculenta HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 87.9
Oeu017108.1 Olea europaea HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
Prupe.6G031600 Prunus persica HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
Prupe.6G032300 Prunus persica HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
PGR042G2666 Punica granatum HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
PGR083G2770 Punica granatum HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
THA.LOC104822711 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 8.5e-25 117.1 66 86.4
Gohir.A04G003200 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 87.9
HanXRQChr08g0232741 Helianthus annuus HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 86.4
Potri.001G469200 Populus trichocarpa HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 86.4
Potri.011G166000 Populus trichocarpa HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 86.4
Sabra16G0318200 Salix brachista HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 86.4
SHI18619 Sapria himalayana HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 86.4
TAR627G1074 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 86.4
TAR629G1228 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.1e-24 116.7 66 86.4
arahy.Tifrunner.gnm1.ann1.Z231WD Arachis hypogaea HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 86.4
BcaB02g10802 Brassica carinata HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 86.4
Cc07_g13980 Coffea canephora HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 86.4
Gohir.A13G130156 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 86.4
Gorai.009G453200 Gossypium raimondii HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 86.4
MBI10_g27408_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 84.8
MBI10_g27411_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 84.8
THA.LOC104801911 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 1.4e-24 116.3 66 83.3
arahy.Tifrunner.gnm1.ann1.YUWQ2H Arachis hypogaea HOM05D003402 ORTHO05D003939 1.9e-24 115.9 66 86.4
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.9e-24 115.9 66 84.8
Lsat_1_v5_gn_5_681 Lactuca sativa HOM05D003402 ORTHO05D003939 1.9e-24 115.9 66 84.8
Lj5g0012042 Lotus japonicus HOM05D003402 ORTHO05D003939 1.9e-24 115.9 66 86.4
Os01g0788950 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 2.5e-24 115.5 66 83.3
Os03g0115200 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 2.5e-24 115.5 66 83.3
SEGI_07786 Sequoiadendron giganteum HOM05D003402 ORTHO05D003939 2.5e-24 115.5 66 83.3
HPP92_006270 Vanilla planifolia HOM05D003402 ORTHO05D003939 2.5e-24 115.5 66 83.3
Zm00001eb151110 Zea mays HOM05D003402 ORTHO05D003939 2.5e-24 115.5 66 83.3
Zm00001eb369690 Zea mays HOM05D003402 ORTHO05D003939 2.5e-24 115.5 66 83.3
ATR0686G129 Amborella trichopoda HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 84.8
ClCG01G000820 Citrullus lanatus HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
ClCG10G004100 Citrullus lanatus HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
MELO3C005848.2 Cucumis melo HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
MELO3C014081.2 Cucumis melo HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
CsaV3_3G003950 Cucumis sativus L. HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
CsaV3_5G000960 Cucumis sativus L. HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
Peaxi162Scf00359g10124 Petunia axillaris HOM05D003402 ORTHO05D003939 3.2e-24 115.2 65 87.7
Rhsim09G0029600 Rhododendron simsii HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
Sp1g41330 Schrenkiella parvula HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 84.8
Sed0010383 Sechium edule HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
Sed0014715 Sechium edule HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
Sed0017285 Sechium edule HOM05D003402 ORTHO05D003939 3.2e-24 115.2 66 86.4
Glyma.18G072600 Glycine max HOM05D003402 ORTHO05D003939 4.2e-24 114.8 66 84.8
Glyma.18G072700 Glycine max HOM05D003402 ORTHO05D003939 4.2e-24 114.8 66 84.8
Phvul.002G190300 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 4.2e-24 114.8 66 84.8
Phvul.006G060100 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 4.2e-24 114.8 66 84.8
Sc03g0011690 Simmondsia chinensis HOM05D003402 ORTHO05D003939 4.2e-24 114.8 66 84.8
VMungo0251G3320 Vigna mungo HOM05D003402 ORTHO05D003939 4.2e-24 114.8 66 84.8
VMungo0540G0608 Vigna mungo HOM05D003402 ORTHO05D003939 4.2e-24 114.8 66 84.8
CiPaw.14G096300 Carya illinoinensis HOM05D003402 ORTHO05D003939 5.5e-24 114.4 66 83.3
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 5.5e-24 114.4 66 84.8
Actinidia10580 Actinidia chinensis HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 84.8
AT3G13230 Arabidopsis thaliana HOM05D003402 ORTHO05D003939 7.2e-24 114.0 78 75.6
BcaB06g25476 Brassica carinata HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 83.3
BcaC05g29198 Brassica carinata HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 83.3
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 83.3
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 83.3
BolC5t34140H Brassica oleracea HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 83.3
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 83.3
Carub.0003s1264 Capsella rubella HOM05D003402 ORTHO05D003939 7.2e-24 114.0 78 75.6
CiPaw.11G208600 Carya illinoinensis HOM05D003402 ORTHO05D003939 7.2e-24 114.0 66 81.8
AL3G25080 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 9.4e-24 113.6 78 75.6
MSTRG.3724 Avicennia marina HOM05D003402 ORTHO05D003939 9.4e-24 113.6 66 83.3
CBR_g49013 Chara braunii HOM05D003402 ORTHO05D003939 9.4e-24 113.6 66 81.8
Ca_07475_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 9.4e-24 113.6 66 84.8
Ca_14849_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 9.4e-24 113.6 66 84.8
Ca_27956_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 9.4e-24 113.6 66 84.8
Duzib268G1061 Durio zibethinus HOM05D003402 ORTHO05D003939 1.2e-23 113.2 65 84.6
Thhalv10021508m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 1.2e-23 113.2 66 83.3
PSO675G7280 Papaver somniferum HOM05D003402 ORTHO05D003939 1.2e-23 113.2 66 80.3
QL08p001639 Quercus lobata HOM05D003402 ORTHO05D003939 1.2e-23 113.2 66 81.8
TPR.G17934 Trifolium pratense HOM05D003402 ORTHO05D003939 1.2e-23 113.2 66 83.3
Aa31LG8G510 Aethionema arabicum HOM05D003402 ORTHO05D003939 1.6e-23 112.8 66 81.8
C06p16210 Brassica napus HOM05D003402 ORTHO05D003939 1.6e-23 112.8 78 75.6
BolC6t36818H Brassica oleracea HOM05D003402 ORTHO05D003939 1.6e-23 112.8 78 75.6
Haze_09893 Corylus avellana HOM05D003402 ORTHO05D003939 1.6e-23 112.8 78 73.1
FvH4_5g31610 Fragaria vesca HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
FAN03G3056 Fragaria x ananassa HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
FAN08G1169 Fragaria x ananassa HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
FAN17G0134 Fragaria x ananassa HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
RcHm_v2.0_Chr7g0227141 Rosa chinensis HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
Sp3g11460 Schrenkiella parvula HOM05D003402 ORTHO05D003939 2.1e-23 112.5 78 74.4
SGA_v2.0_scaffold45G17223 Striga asiatica HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
unitig_0.g2650 Utricularia gibba HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
unitig_748.g8474 Utricularia gibba HOM05D003402 ORTHO05D003939 2.1e-23 112.5 66 81.8
Cfa016938 Carpinus fangiana HOM05D003402 ORTHO05D003939 2.7e-23 112.1 78 73.1
Mapoly0008s0090 Marchantia polymorpha HOM05D003402 ORTHO05D003939 2.7e-23 112.1 66 80.3
Medtr3g061130 Medicago truncatula HOM05D003402 ORTHO05D003939 2.7e-23 112.1 66 83.3
SMO353G0217 Selaginella moellendorffii HOM05D003402 ORTHO05D003939 2.7e-23 112.1 66 80.3
MSTRG.15682 Avicennia marina HOM05D003402 ORTHO05D003939 3.6e-23 111.7 66 81.8
CARHR087880 Cardamine hirsuta HOM05D003402 ORTHO05D003939 3.6e-23 111.7 66 80.3
Thhalv10014450m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 3.6e-23 111.7 66 81.8
Aa31LG10G440 Aethionema arabicum HOM05D003402 ORTHO05D003939 4.7e-23 111.3 78 73.1
BcaC08g44215 Brassica carinata HOM05D003402 ORTHO05D003939 4.7e-23 111.3 77 75.3
Migut.K00809 Erythranthe guttata HOM05D003402 ORTHO05D003939 4.7e-23 111.3 66 80.3
Psat5g164680 Pisum sativum HOM05D003402 ORTHO05D003939 4.7e-23 111.3 66 83.3
arahy.Tifrunner.gnm1.ann1.V7LA8U Arachis hypogaea HOM05D003402 ORTHO05D003939 6.1e-23 110.9 66 83.3
Nn2g11712 Nelumbo nucifera HOM05D003402 ORTHO05D003939 6.1e-23 110.9 69 78.3
Pp3c2_270 Physcomitrium patens HOM05D003402 ORTHO05D003939 7.9e-23 110.5 78 70.5
Nn1g09837 Nelumbo nucifera HOM05D003402 ORTHO05D003939 1.0e-22 110.2 78 73.1
Peaxi162Scf01158g00027 Petunia axillaris HOM05D003402 ORTHO05D003939 1.0e-22 110.2 66 83.3
EL10Ac4g10262 Beta vulgaris HOM05D003402 ORTHO05D003939 3.0e-22 108.6 66 78.8
EL10Ac4g10278 Beta vulgaris HOM05D003402 ORTHO05D003939 3.0e-22 108.6 66 78.8
AUR62026671 Chenopodium quinoa HOM05D003402 ORTHO05D003939 8.8e-22 107.1 66 78.8
AUR62035669 Chenopodium quinoa HOM05D003402 ORTHO05D003939 8.8e-22 107.1 66 78.8
AUR62040577 Chenopodium quinoa HOM05D003402 ORTHO05D003939 8.8e-22 107.1 66 78.8
A05p17340 Brassica napus HOM05D003402 ORTHO05D003939 1.1e-21 106.7 66 80.3
AL1G63860 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 1.5e-21 106.3 66 78.8
Migut.K00808 Erythranthe guttata HOM05D003402 ORTHO05D003939 4.4e-21 104.8 66 77.3
EL10Ac1g01597 Beta vulgaris HOM05D003402 ORTHO05D003939 1.7e-20 102.8 66 75.8
Cre12.g549700 Chlamydomonas reinhardtii HOM05D003402 ORTHO05D003939 1.7e-20 102.8 78 65.4
Ah.01g016790 Amaranthus hybridus HOM05D003402 ORTHO05D003939 2.8e-20 102.1 63 77.8
CANSAT01G1735 Cannabis sativa HOM05D003402 ORTHO05D003939 3.7e-20 101.7 66 75.8
Medtr5g088410 Medicago truncatula HOM05D003402 ORTHO05D003939 3.7e-20 101.7 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.2223 Anthoceros agrestis HOM05D003402 ORTHO05D003939 4.8e-20 101.3 66 71.2
AagrBONN_evm.TU.Sc2ySwM_344.5330 Anthoceros agrestis HOM05D003402 ORTHO05D003939 4.8e-20 101.3 66 71.2
Sc07g0001990 Simmondsia chinensis HOM05D003402 ORTHO05D003939 4.8e-20 101.3 66 71.2
PRCOL_00004610 Prasinoderma coloniale HOM05D003402 ORTHO05D003939 6.3e-20 100.9 81 58.0
SGA_v2.0_scaffold17G08096 Striga asiatica HOM05D003402 ORTHO05D003939 8.2e-20 100.5 66 72.7
MCO11G345 Micromonas commoda HOM05D003402 ORTHO05D003939 2.4e-19 99.0 66 71.2
Sed0019842 Sechium edule HOM05D003402 ORTHO05D003939 9.1e-19 97.1 66 77.3
GSVIVG01008219001 Vitis vinifera HOM05D003402 ORTHO05D003939 1.2e-18 96.7 57 82.5
Cfa026698 Carpinus fangiana HOM05D003402 ORTHO05D003939 4.5e-18 94.7 66 66.7
BcaB02g10801 Brassica carinata HOM05D003402 ORTHO05D003939 7.7e-18 94.0 54 85.2
Hund02357 Selenicereus undatus HOM05D003402 ORTHO05D003939 7.7e-18 94.0 65 64.6
SGA_v2.0_scaffold312G48272 Striga asiatica HOM05D003402 ORTHO05D003939 1.3e-17 93.2 99 57.6
Haze_26506 Corylus avellana HOM05D003402 ORTHO05D003939 6.5e-17 90.9 66 63.6
AUR62017904 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.1e-16 90.1 66 65.2
AUR62043564 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.1e-16 90.1 66 65.2
AUR62017905 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.5e-16 89.0 66 66.7
Ah.16g107980 Amaranthus hybridus HOM05D003402 ORTHO05D003939 3.2e-16 88.6 73 60.3
EL10Ac4g07749 Beta vulgaris HOM05D003402 ORTHO05D003939 5.2e-14 81.3 66 59.1
CANSAT78G0394 Cannabis sativa HOM05D003402 ORTHO05D003939 5.2e-14 81.3 61 63.9
Nitab4.5_0000876g0050 Nicotiana tabacum HOM05D003402 ORTHO05D003939 8.8e-14 80.5 67 61.2
Hund02372 Selenicereus undatus HOM05D003402 ORTHO05D003939 8.8e-14 80.5 63 61.9
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 9.1e-11 70.5 60 63.3
Ah.01g016810 Amaranthus hybridus HOM05D003402 ORTHO05D003939 1.2e-10 70.1 57 59.6
BraA05t20630Z Brassica rapa HOM05D003402 ORTHO05D003939 2.6e-10 68.9 56 66.1
Cpa.g.sc106.81 Carica papaya HOM05D003402 ORTHO05D003939 3.6e-07 58.5 38 76.3
Sopen10g014340 Solanum pennellii HOM05D003402 ORTHO05D003939 1.8e-06 56.2 37 73.0
EL10Ac4g08690 Beta vulgaris HOM05D003402 ORTHO05D003939 5.2e-06 54.7 52 57.7


User provided reference genes

Program Settings