Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 0.0e+00 1683.3 878 100.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 0.0e+00 1653.6 878 98.5
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 0.0e+00 1572.0 870 95.1
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 0.0e+00 1269.6 878 76.7
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 0.0e+00 1262.3 873 77.7
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 0.0e+00 1174.1 886 72.9
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.1e-283 979.2 869 64.8
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-282 976.1 869 64.3
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.1e-279 966.8 864 62.8
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.2e-240 836.3 867 55.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 7.4e-236 821.2 834 55.4
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.2e-232 809.7 853 55.3
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.2e-231 805.8 853 55.1
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.6e-230 802.0 851 54.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.3e-229 799.7 848 53.9
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.3e-227 791.6 843 55.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.4e-220 768.8 859 54.1
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-214 750.7 664 63.4
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.6e-214 750.4 851 51.2
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.7e-212 741.9 822 52.6
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 4.8e-211 738.8 844 50.5
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 9.1e-210 734.6 836 51.2
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.5e-209 732.3 880 51.6
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.2e-208 729.9 895 50.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.2e-208 729.9 941 49.1
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.5e-207 727.2 844 50.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.1e-206 723.4 846 50.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.8e-203 712.2 842 50.0
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 6.3e-203 711.8 853 50.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.3e-203 711.4 842 50.0
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.2e-201 707.6 892 50.9
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-201 706.8 842 49.5
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.0e-201 706.8 908 47.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 4.5e-201 705.7 893 50.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 7.7e-201 704.9 844 49.3
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.0e-200 704.5 904 49.6
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.3e-200 704.1 904 49.6
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.3e-200 704.1 882 49.5
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.8e-200 702.6 902 49.6
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.5e-199 698.7 903 49.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.3e-197 693.3 891 49.7
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 6.8e-197 691.8 851 48.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.8e-196 688.0 903 49.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-195 687.2 889 48.6
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-194 684.1 839 48.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 3.5e-193 679.5 867 49.1
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-192 676.4 888 47.9
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.0e-192 675.6 891 47.8
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-191 674.5 844 47.2
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.9e-191 673.7 899 48.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.0e-189 667.9 871 48.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-189 667.5 845 48.9
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.8e-189 665.2 855 48.0
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.9e-189 664.8 734 53.3
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 8.9e-189 664.8 864 49.3
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.5e-188 664.1 844 47.6
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.0e-188 663.7 890 47.2
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 2.6e-188 663.3 892 47.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 6.4e-187 658.7 882 46.5
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.8e-186 657.1 852 47.3
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 5.4e-186 655.6 890 47.4
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.0e-185 653.7 891 47.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.0e-184 649.8 888 49.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 8.6e-184 648.3 633 58.6
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.5e-183 646.7 839 46.2
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 4.3e-183 646.0 898 46.2
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 9.5e-183 644.8 888 46.7
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-182 644.4 851 46.9
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.8e-181 640.6 894 45.9
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.3e-181 640.2 829 46.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.0e-181 639.4 841 45.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.8e-180 635.6 828 45.9
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.3e-179 634.4 868 46.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.4e-178 630.2 836 47.1
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 9.2e-178 628.2 848 46.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.0e-177 627.1 812 48.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-176 623.6 868 45.5
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.9e-175 620.5 843 46.4
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 4.3e-175 619.4 824 47.6
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 6.2e-174 615.5 882 45.5
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 5.2e-173 612.5 852 45.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.3e-171 607.8 891 45.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.9e-171 606.7 870 44.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.7e-171 606.3 886 45.9
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-168 597.4 695 50.9
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.5e-167 593.6 891 43.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 7.3e-167 592.0 886 44.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.1e-166 590.5 860 45.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.8e-166 590.1 813 47.0
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 3.6e-166 589.7 878 44.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 5.2e-165 585.9 845 43.8
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.2e-164 584.7 842 44.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.1e-162 578.2 842 43.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.2e-161 574.7 825 45.5
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.2e-161 574.7 913 41.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 7.8e-161 572.0 888 43.6
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.3e-160 570.5 870 43.1
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-158 564.3 869 45.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.7e-158 562.8 849 45.8
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 6.2e-158 562.4 848 44.1
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-156 557.4 844 44.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 9.3e-154 548.5 843 43.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.6e-153 547.7 808 44.1
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.9e-151 540.8 631 50.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 6.2e-150 535.8 800 44.2
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-149 533.5 859 42.0
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 3.1e-149 533.5 822 43.1
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 9.0e-149 531.9 823 42.6
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 5.4e-146 522.7 564 53.7
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.6e-145 519.6 812 42.1
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.3e-144 517.3 799 42.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.0e-144 516.9 813 42.8
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 5.1e-144 516.2 812 42.6
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.5e-143 514.6 863 42.5
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.9e-143 514.2 862 42.3
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.9e-139 499.6 857 42.8
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.1e-138 498.4 840 41.4
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.6e-137 494.6 829 41.7
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.6e-137 494.6 841 39.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 2.3e-136 490.7 798 41.1
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 3.9e-136 490.0 799 41.4
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 3.9e-136 490.0 799 41.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.1e-135 488.4 815 41.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.1e-135 488.4 798 41.1
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.0e-133 479.9 824 40.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 8.4e-131 472.2 812 41.1
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-130 471.5 822 40.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.4e-130 471.5 822 40.8
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 5.5e-130 469.5 799 41.4
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 7.1e-130 469.2 804 41.0
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 6.0e-129 466.1 799 41.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.8e-126 457.2 851 39.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-124 451.4 654 44.8
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 5.9e-124 449.5 820 39.4
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.7e-121 440.7 654 45.3
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.7e-121 440.7 826 37.9
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.4e-120 438.3 920 38.2
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 9.7e-119 432.2 822 39.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.3e-111 407.1 450 50.4
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 7.4e-111 406.0 415 56.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.8e-110 404.1 630 43.5
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 5.7e-103 379.8 830 36.3
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.1e-101 373.6 825 36.4
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.4e-96 358.6 557 41.7
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 3.0e-96 357.5 584 42.0
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-94 351.7 327 61.5
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.4e-87 327.0 911 31.9
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.8e-86 324.3 377 48.5
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 3.8e-83 313.9 865 33.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.0e-79 301.6 847 33.5
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.4e-77 295.4 833 33.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.2e-77 292.7 336 49.7
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 8.0e-73 279.6 286 54.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.8e-71 273.5 862 31.1
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-61 242.7 381 42.0
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 5.4e-61 240.4 751 32.6
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 6.0e-52 210.3 357 43.1
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.3e-51 209.1 421 39.2
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 2.8e-49 201.4 227 52.9
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.4e-48 198.4 236 49.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.4e-45 188.3 483 31.3
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 8.7e-43 179.9 280 45.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 5.3e-40 170.6 127 62.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.4e-39 167.9 239 42.7
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.4e-39 167.9 566 29.2
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 3.0e-35 154.8 194 49.5
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.9e-30 138.3 115 59.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 2.7e-28 131.7 103 57.3
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.6e-26 124.0 268 39.2
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 9.6e-26 123.2 127 54.3
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.8e-25 121.7 220 37.3
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 6.9e-24 117.1 153 46.4
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.5e-21 108.6 91 59.3
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.1e-20 105.5 101 56.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.5e-18 98.6 162 37.7
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.4e-14 83.6 90 51.1
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 3.7e-09 68.2 97 37.1
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-08 66.2 41 73.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.1e-08 64.7 125 38.4
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.4e-07 61.6 95 35.8


User provided reference genes

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