Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g013210 Solanum pennellii HOM05D001947 ORTHO05D394374 1.3e-35 152.5 80 100.0
PGSC0003DMG401026767 Solanum tuberosum HOM05D001947 ORTHO05D002440 3.8e-14 81.3 82 62.2
PGSC0003DMG402026767 Solanum tuberosum HOM05D001947 ORTHO05D002440 3.8e-14 81.3 82 62.2
Solyc06g019170.3 Solanum lycopersicum HOM05D001947 ORTHO05D002440 5.0e-14 80.9 82 62.2
Sopen06g009130 Solanum pennellii HOM05D001947 ORTHO05D002440 5.0e-14 80.9 82 62.2
CAN.G55.4 Capsicum annuum HOM05D001947 ORTHO05D002440 1.9e-13 79.0 81 61.7
Nitab4.5_0000987g0050 Nicotiana tabacum HOM05D001947 ORTHO05D002440 9.4e-13 76.6 81 59.3
Peaxi162Scf00658g00314 Petunia axillaris HOM05D001947 ORTHO05D002440 9.4e-13 76.6 81 59.3
Nitab4.5_0000820g0050 Nicotiana tabacum HOM05D001947 ORTHO05D002440 1.2e-12 76.3 81 58.0
Solyc08g043170.4 Solanum lycopersicum HOM05D001947 ORTHO05D002440 1.1e-10 69.7 81 54.3
Dinv34468 Davidia involucrata HOM05D001947 ORTHO05D002440 1.5e-10 69.3 81 51.9
Nitab4.5_0005552g0010 Nicotiana tabacum HOM05D001947 ORTHO05D002440 1.5e-10 69.3 81 55.6
Nitab4.5_0005907g0020 Nicotiana tabacum HOM05D001947 ORTHO05D002440 1.5e-10 69.3 81 56.8
CAN.G56.12 Capsicum annuum HOM05D001947 ORTHO05D002440 2.6e-10 68.6 81 54.3
Ah.16g102690 Amaranthus hybridus HOM05D001947 ORTHO05D002440 9.7e-10 66.6 66 56.1
Sopen08g012950 Solanum pennellii HOM05D001947 ORTHO05D002440 9.7e-10 66.6 81 53.1
DCAR_027589 Daucus carota HOM05D001947 ORTHO05D002440 1.3e-09 66.2 83 49.4
MELO3C008245.2 Cucumis melo HOM05D001947 ORTHO05D002440 1.7e-09 65.9 81 49.4
CsaV3_6G001400 Cucumis sativus L. HOM05D001947 ORTHO05D002440 1.7e-09 65.9 81 49.4
FAN05G4120 Fragaria x ananassa HOM05D001947 ORTHO05D002440 1.7e-09 65.9 70 50.0
Migut.F01286 Erythranthe guttata HOM05D001947 ORTHO05D002440 2.2e-09 65.5 81 49.4
Ciclev10030839m.g Citrus clementina HOM05D001947 ORTHO05D002440 2.8e-09 65.1 81 46.9
Eucgr.G02990 Eucalyptus grandis HOM05D001947 ORTHO05D002440 2.8e-09 65.1 88 48.9
Actinidia13892 Actinidia chinensis HOM05D001947 ORTHO05D002440 3.7e-09 64.7 81 46.9
MSTRG.262 Avicennia marina HOM05D001947 ORTHO05D002440 3.7e-09 64.7 81 49.4
Haze_17128 Corylus avellana HOM05D001947 ORTHO05D002440 3.7e-09 64.7 66 54.5
MD00G1141100 Malus domestica HOM05D001947 ORTHO05D002440 3.7e-09 64.7 81 46.9
Oeu001518.3 Olea europaea HOM05D001947 ORTHO05D002440 6.3e-09 63.9 81 49.4
TWI59G0560 Tripterygium wilfordii HOM05D001947 ORTHO05D002440 6.3e-09 63.9 81 46.9
Sed0016728 Sechium edule HOM05D001947 ORTHO05D002440 8.2e-09 63.5 81 48.1
SGA_v2.0_scaffold2G00986 Striga asiatica HOM05D001947 ORTHO05D002440 8.2e-09 63.5 81 46.9
ClCG11G006600 Citrullus lanatus HOM05D001947 ORTHO05D002440 1.4e-08 62.8 89 46.1
Sed0019707 Sechium edule HOM05D001947 ORTHO05D002440 1.4e-08 62.8 81 45.7
arahy.Tifrunner.gnm1.ann1.NA5QFN Arachis hypogaea HOM05D001947 ORTHO05D002440 1.8e-08 62.4 75 48.0
MSTRG.8285 Avicennia marina HOM05D001947 ORTHO05D002440 1.8e-08 62.4 81 45.7
EL10Ac2g04689 Beta vulgaris HOM05D001947 ORTHO05D002440 1.8e-08 62.4 71 52.1
Duzib114G0145 Durio zibethinus HOM05D001947 ORTHO05D002440 1.8e-08 62.4 81 48.1
Gohir.A10G223400 Gossypium hirsutum HOM05D001947 ORTHO05D002440 2.4e-08 62.0 81 46.9
Gohir.A11G327900 Gossypium hirsutum HOM05D001947 ORTHO05D002440 2.4e-08 62.0 80 45.0
Gohir.D10G235800 Gossypium hirsutum HOM05D001947 ORTHO05D002440 2.4e-08 62.0 81 46.9
Gorai.011G269700 Gossypium raimondii HOM05D001947 ORTHO05D002440 2.4e-08 62.0 81 46.9
FvH4_6g12980 Fragaria vesca HOM05D001947 ORTHO05D002440 3.1e-08 61.6 81 43.2
MD04G1136200 Malus domestica HOM05D001947 ORTHO05D002440 4.1e-08 61.2 66 50.0
TWI23G0119 Tripterygium wilfordii HOM05D001947 ORTHO05D002440 4.1e-08 61.2 81 46.9
Migut.F00741 Erythranthe guttata HOM05D001947 ORTHO05D002440 5.3e-08 60.8 81 46.9
MD12G1150700 Malus domestica HOM05D001947 ORTHO05D002440 5.3e-08 60.8 81 44.4
Nn6g32118 Nelumbo nucifera HOM05D001947 ORTHO05D002440 5.3e-08 60.8 81 46.9
unitig_22.g6673 Utricularia gibba HOM05D001947 ORTHO05D002440 5.3e-08 60.8 81 48.1
Duzib106G1125 Durio zibethinus HOM05D001947 ORTHO05D002440 7.0e-08 60.5 81 46.9
Hma1.2p1_0766F.1_g215140 Hydrangea macrophylla HOM05D001947 ORTHO05D002440 7.0e-08 60.5 81 46.9
Carub.0004s2190 Capsella rubella HOM05D001947 ORTHO05D002440 9.1e-08 60.1 81 45.7
Lj2C88T11 Lonicera japonica HOM05D001947 ORTHO05D002440 9.1e-08 60.1 70 51.4
PSO339G0512 Papaver somniferum HOM05D001947 ORTHO05D002440 9.1e-08 60.1 82 46.3
PSO384G3390 Papaver somniferum HOM05D001947 ORTHO05D002440 9.1e-08 60.1 82 46.3
RcHm_v2.0_Chr1g0368541 Rosa chinensis HOM05D001947 ORTHO05D002440 9.1e-08 60.1 81 42.0
VMungo1383G2509 Vigna mungo HOM05D001947 ORTHO05D002440 9.1e-08 60.1 81 43.2
AL4G37340 Arabidopsis lyrata HOM05D001947 ORTHO05D002440 1.2e-07 59.7 81 45.7
Cc02_g07340 Coffea canephora HOM05D001947 ORTHO05D002440 1.2e-07 59.7 81 46.9
COL.COLO4_25521 Corchorus olitorius HOM05D001947 ORTHO05D002440 1.2e-07 59.7 81 45.7
Lalb_Chr20g0116801 Lupinus albus HOM05D001947 ORTHO05D002440 1.2e-07 59.7 81 42.0
Potri.010G198400 Populus trichocarpa HOM05D001947 ORTHO05D002440 1.2e-07 59.7 81 45.7
TAR636G3200 Trochodendron aralioides HOM05D001947 ORTHO05D002440 1.2e-07 59.7 81 46.9
GSVIVG01016467001 Vitis vinifera HOM05D001947 ORTHO05D002440 1.2e-07 59.7 81 45.7
Actinidia05329 Actinidia chinensis HOM05D001947 ORTHO05D002440 1.6e-07 59.3 81 44.4
Aqoxy2G02350 Aquilegia oxysepala HOM05D001947 ORTHO05D002440 1.6e-07 59.3 81 45.7
Dinv16262 Davidia involucrata HOM05D001947 ORTHO05D002440 1.6e-07 59.3 84 46.4
Hma1.2p1_0039F.1_g024670 Hydrangea macrophylla HOM05D001947 ORTHO05D002440 1.6e-07 59.3 81 44.4
Lalb_Chr18g0053021 Lupinus albus HOM05D001947 ORTHO05D002440 1.6e-07 59.3 81 43.2
Manes.07G120700 Manihot esculenta HOM05D001947 ORTHO05D002440 1.6e-07 59.3 81 45.7
Os05g0455500 Oryza sativa ssp. japonica HOM05D001947 ORTHO05D002440 1.6e-07 59.3 81 45.7
Sabra10G0152700 Salix brachista HOM05D001947 ORTHO05D002440 1.6e-07 59.3 81 44.4
HanXRQChr07g0201741 Helianthus annuus HOM05D001947 ORTHO05D002440 2.0e-07 58.9 81 44.4
MBI05_g02644_MAGBIO Magnolia biondii HOM05D001947 ORTHO05D002440 2.0e-07 58.9 84 44.0
Phvul.001G236900 Phaseolus vulgaris HOM05D001947 ORTHO05D002440 2.0e-07 58.9 81 42.0
THA.LOC104824302 Tarenaya hassleriana HOM05D001947 ORTHO05D002440 2.0e-07 58.9 81 45.7
Thecc.10G034600 Theobroma cacao HOM05D001947 ORTHO05D002440 2.0e-07 58.9 81 45.7
TAR636G0877 Trochodendron aralioides HOM05D001947 ORTHO05D002440 2.0e-07 58.9 81 45.7
Atru.chr2.341 Acer truncatum HOM05D001947 ORTHO05D002440 2.7e-07 58.5 82 46.3
Atru.chr8.2063 Acer truncatum HOM05D001947 ORTHO05D002440 2.7e-07 58.5 82 46.3
Cpa.g.sc454.3 Carica papaya HOM05D001947 ORTHO05D002440 2.7e-07 58.5 86 43.0
ECA238G1315 Erigeron canadensis HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 44.4
FvH4_7g23420 Fragaria vesca HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 42.0
FAN01G1908 Fragaria x ananassa HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 42.0
FAN06G1106 Fragaria x ananassa HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 42.0
FAN06G4968 Fragaria x ananassa HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 42.0
FAN10G0699 Fragaria x ananassa HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 42.0
Potri.008G060200 Populus trichocarpa HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 44.4
unitig_8.g3309 Utricularia gibba HOM05D001947 ORTHO05D002440 2.7e-07 58.5 81 48.1
Ciclev10011176m.g Citrus clementina HOM05D001947 ORTHO05D002440 3.5e-07 58.2 81 45.7
FAN03G3080 Fragaria x ananassa HOM05D001947 ORTHO05D002440 3.5e-07 58.2 81 42.0
Lj6g0024002 Lotus japonicus HOM05D001947 ORTHO05D002440 3.5e-07 58.2 81 43.2
Manes.10G024800 Manihot esculenta HOM05D001947 ORTHO05D002440 3.5e-07 58.2 81 43.2
Zm00001eb347680 Zea mays HOM05D001947 ORTHO05D002440 3.5e-07 58.2 81 45.7
ATR0559G072 Amborella trichopoda HOM05D001947 ORTHO05D002440 4.5e-07 57.8 82 45.1
AUR62040689 Chenopodium quinoa HOM05D001947 ORTHO05D002440 4.5e-07 57.8 71 49.3
AUR62012146 Chenopodium quinoa HOM05D001947 ORTHO05D002440 5.9e-07 57.4 71 49.3
ECA236G0076 Erigeron canadensis HOM05D001947 ORTHO05D002440 5.9e-07 57.4 81 43.2
AT2G39800 Arabidopsis thaliana HOM05D001947 ORTHO05D002440 1.0e-06 56.6 81 43.2
CANSAT56G3123 Cannabis sativa HOM05D001947 ORTHO05D002440 1.0e-06 56.6 81 40.7
CiPaw.09G199300 Carya illinoinensis HOM05D001947 ORTHO05D002440 1.0e-06 56.6 78 44.9
Duzib093G1092 Durio zibethinus HOM05D001947 ORTHO05D002440 1.0e-06 56.6 81 43.2
Gohir.D11G346800 Gossypium hirsutum HOM05D001947 ORTHO05D002440 1.0e-06 56.6 81 43.2
Gorai.007G377200 Gossypium raimondii HOM05D001947 ORTHO05D002440 1.0e-06 56.6 81 43.2
Os01g0848200 Oryza sativa ssp. japonica HOM05D001947 ORTHO05D002440 1.0e-06 56.6 81 42.0
PGR142G4170 Punica granatum HOM05D001947 ORTHO05D002440 1.0e-06 56.6 81 42.0
Aa31LG10G10620 Aethionema arabicum HOM05D001947 ORTHO05D002440 1.3e-06 56.2 75 45.3
ECA233G2143 Erigeron canadensis HOM05D001947 ORTHO05D002440 1.3e-06 56.2 81 42.0
HanXRQChr06g0177501 Helianthus annuus HOM05D001947 ORTHO05D002440 1.3e-06 56.2 81 42.0
LjContig00141g0015744 Lotus japonicus HOM05D001947 ORTHO05D002440 1.3e-06 56.2 81 43.2
Prupe.2G240800 Prunus persica HOM05D001947 ORTHO05D002440 1.3e-06 56.2 81 39.5
MELO3C009229.2 Cucumis melo HOM05D001947 ORTHO05D002440 1.7e-06 55.8 81 39.5
CsaV3_3G034580 Cucumis sativus L. HOM05D001947 ORTHO05D002440 1.7e-06 55.8 81 39.5
Medtr3g069080 Medicago truncatula HOM05D001947 ORTHO05D002440 1.7e-06 55.8 81 39.5
Sc10g0001870 Simmondsia chinensis HOM05D001947 ORTHO05D002440 1.7e-06 55.8 81 44.4
Thecc.05G032200 Theobroma cacao HOM05D001947 ORTHO05D002440 1.7e-06 55.8 81 44.4
TAR633G1843 Trochodendron aralioides HOM05D001947 ORTHO05D002440 1.7e-06 55.8 81 44.4
C03p26390 Brassica napus HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 42.0
BolC4t28260H Brassica oleracea HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 39.5
CANSAT35G2026 Cannabis sativa HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 44.4
CARHR165670 Cardamine hirsuta HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 42.0
ClCG10G021450 Citrullus lanatus HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 38.3
Lsat_1_v5_gn_2_117820 Lactuca sativa HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 40.7
Lsat_1_v5_gn_8_84340 Lactuca sativa HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 42.0
Peaxi162Scf00071g00712 Petunia axillaris HOM05D001947 ORTHO05D002440 2.2e-06 55.5 37 81.1
Prupe.6G262300 Prunus persica HOM05D001947 ORTHO05D002440 2.2e-06 55.5 81 38.3
Atru.chr12.310 Acer truncatum HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 43.2
Atru.chr12.339 Acer truncatum HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 43.2
AL5G36820 Arabidopsis lyrata HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 40.7
BcaC01g05465 Brassica carinata HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 40.7
BolC4t25122H Brassica oleracea HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 40.7
Cfa017318 Carpinus fangiana HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 42.0
CiPaw.02G187200 Carya illinoinensis HOM05D001947 ORTHO05D002440 2.9e-06 55.1 66 45.5
Ca_05442_v3 Cicer arietinum L. HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 42.0
Ca_08197_v3 Cicer arietinum L. HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 39.5
Ca_25275_v3 Cicer arietinum L. HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 39.5
HanXRQChr08g0221191 Helianthus annuus HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 44.4
Lalb_Chr01g0022711 Lupinus albus HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 43.2
Phvul.008G230300 Phaseolus vulgaris HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 42.0
Rhsim09G0168800 Rhododendron simsii HOM05D001947 ORTHO05D002440 2.9e-06 55.1 90 40.0
Sp4g22080 Schrenkiella parvula HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 40.7
Hund16052 Selenicereus undatus HOM05D001947 ORTHO05D002440 2.9e-06 55.1 87 42.5
THA.LOC104810068 Tarenaya hassleriana HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 44.4
TPR.G10324 Trifolium pratense HOM05D001947 ORTHO05D002440 2.9e-06 55.1 76 42.1
HPP92_003417 Vanilla planifolia HOM05D001947 ORTHO05D002440 2.9e-06 55.1 82 42.7
Zm00001eb289500 Zea mays HOM05D001947 ORTHO05D002440 2.9e-06 55.1 81 43.2
A05p06600 Brassica napus HOM05D001947 ORTHO05D002440 3.8e-06 54.7 81 40.7
A09p48600 Brassica napus HOM05D001947 ORTHO05D002440 3.8e-06 54.7 81 40.7
BraA09t40312Z Brassica rapa HOM05D001947 ORTHO05D002440 3.8e-06 54.7 81 40.7
DCAR_028770 Daucus carota HOM05D001947 ORTHO05D002440 3.8e-06 54.7 71 45.1
Zm00001eb367740 Zea mays HOM05D001947 ORTHO05D002440 3.8e-06 54.7 81 42.0
Aqoxy1G00830 Aquilegia oxysepala HOM05D001947 ORTHO05D002440 5.0e-06 54.3 81 45.7
A03p22290 Brassica napus HOM05D001947 ORTHO05D002440 5.0e-06 54.3 81 40.7
BolC3t15024H Brassica oleracea HOM05D001947 ORTHO05D002440 5.0e-06 54.3 81 40.7
Cfa001416 Carpinus fangiana HOM05D001947 ORTHO05D002440 5.0e-06 54.3 81 44.4
Thhalv10010150m.g Eutrema salsugineum HOM05D001947 ORTHO05D002440 5.0e-06 54.3 81 40.7
VMungo0647G1828 Vigna mungo HOM05D001947 ORTHO05D002440 5.0e-06 54.3 88 40.9
GSVIVG01034097001 Vitis vinifera HOM05D001947 ORTHO05D002440 5.0e-06 54.3 81 44.4
arahy.Tifrunner.gnm1.ann1.WS4P7I Arachis hypogaea HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 43.2
BcaB02g09087 Brassica carinata HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
BcaC07g39890 Brassica carinata HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
C04p07710 Brassica napus HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
C04p67610 Brassica napus HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 39.5
C08p30930 Brassica napus HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
BolC8t50718H Brassica oleracea HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
BraA03t11461Z Brassica rapa HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
BraA05t19627Z Brassica rapa HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
Carub.0005s2236 Capsella rubella HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
Psat5g040600 Pisum sativum HOM05D001947 ORTHO05D002440 6.5e-06 53.9 80 40.0
Sp5g06860 Schrenkiella parvula HOM05D001947 ORTHO05D002440 6.5e-06 53.9 81 40.7
HPP92_003420 Vanilla planifolia HOM05D001947 ORTHO05D002440 6.5e-06 53.9 82 41.5
CSS0013546 Camellia sinensis var. sinensis HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 42.0
CARHR134680 Cardamine hirsuta HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 42.0
Migut.L01967 Erythranthe guttata HOM05D001947 ORTHO05D002440 8.5e-06 53.5 82 41.5
Glyma.18G034300 Glycine max HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 39.5
Gohir.A01G221500 Gossypium hirsutum HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 42.0
Gohir.D01G210500 Gossypium hirsutum HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 40.7
Gorai.002G256200 Gossypium raimondii HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 40.7
Phvul.008G115100 Phaseolus vulgaris HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 43.2
Psat3g135680 Pisum sativum HOM05D001947 ORTHO05D002440 8.5e-06 53.5 81 40.7


User provided reference genes

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