Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g008290 Solanum pennellii HOM05D006787 ORTHO05D008366 0.0e+00 1256.5 692 100.0
Solyc12g017510.2 Solanum lycopersicum HOM05D006787 ORTHO05D008366 0.0e+00 1198.7 692 95.1
PGSC0003DMG400006459 Solanum tuberosum HOM05D006787 ORTHO05D008366 0.0e+00 1126.7 692 90.6
CAN.G207.7 Capsicum annuum HOM05D006787 ORTHO05D008366 2.4e-290 1001.9 697 80.5
Peaxi162Scf00057g01911 Petunia axillaris HOM05D006787 ORTHO05D008366 3.6e-270 934.9 698 77.2
Nitab4.5_0006083g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 1.1e-269 933.3 696 76.0
Nitab4.5_0005148g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 4.6e-265 917.9 698 76.5
Hma1.2p1_0000F.1_g000320 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 2.0e-199 699.9 599 60.4
Dinv33252 Davidia involucrata HOM05D006787 ORTHO05D008366 3.1e-197 692.6 589 63.3
TAR636G3644 Trochodendron aralioides HOM05D006787 ORTHO05D008366 9.1e-197 691.0 605 64.8
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 5.9e-196 688.3 604 61.3
Nn7g37422 Nelumbo nucifera HOM05D006787 ORTHO05D008366 1.1e-194 684.1 596 62.8
Prupe.6G118500 Prunus persica HOM05D006787 ORTHO05D008366 1.1e-194 684.1 676 59.3
MSTRG.11562 Avicennia marina HOM05D006787 ORTHO05D008366 3.2e-194 682.6 691 57.9
CSS0000740 Camellia sinensis var. sinensis HOM05D006787 ORTHO05D008366 7.2e-194 681.4 660 59.5
Manes.01G009700 Manihot esculenta HOM05D006787 ORTHO05D008366 7.2e-194 681.4 693 55.7
Lju124A5G21 Lonicera japonica HOM05D006787 ORTHO05D008366 1.8e-192 676.8 595 61.2
TWI63G1373 Tripterygium wilfordii HOM05D006787 ORTHO05D008366 3.0e-192 676.0 592 61.5
FAN26G1372 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.4e-191 672.5 611 63.8
BolC3t14481H Brassica oleracea HOM05D006787 ORTHO05D008366 4.4e-191 672.2 581 62.5
AT2G31890 Arabidopsis thaliana HOM05D006787 ORTHO05D008366 1.7e-190 670.2 592 64.5
CiPaw.02G125400 Carya illinoinensis HOM05D006787 ORTHO05D008366 2.8e-190 669.5 636 57.2
Potri.017G001600 Populus trichocarpa HOM05D006787 ORTHO05D008366 1.1e-189 667.5 631 57.8
Sabra17G0005700 Salix brachista HOM05D006787 ORTHO05D008366 2.4e-189 666.4 610 61.5
Haze_11111 Corylus avellana HOM05D006787 ORTHO05D008366 4.1e-189 665.6 568 65.8
Sp4g14240 Schrenkiella parvula HOM05D006787 ORTHO05D008366 9.1e-189 664.5 597 60.0
Carub.0004s1319 Capsella rubella HOM05D006787 ORTHO05D008366 1.2e-188 664.1 593 61.6
Thecc.05G000800 Theobroma cacao HOM05D006787 ORTHO05D008366 1.2e-188 664.1 597 58.6
AL4G27180 Arabidopsis lyrata HOM05D006787 ORTHO05D008366 1.6e-188 663.7 595 62.2
Migut.O00275 Erythranthe guttata HOM05D006787 ORTHO05D008366 2.7e-188 662.9 658 59.6
BraA03t11058Z Brassica rapa HOM05D000200 ORTHO05D000262 3.5e-188 662.5 594 61.8
Aa31LG5G5150 Aethionema arabicum HOM05D006787 ORTHO05D008366 2.2e-187 659.8 593 61.2
Cpa.g.sc9.243 Carica papaya HOM05D006787 ORTHO05D008366 3.8e-187 659.1 591 60.6
CARHR125600 Cardamine hirsuta HOM05D006787 ORTHO05D008366 1.9e-186 656.8 583 61.4
RcHm_v2.0_Chr2g0084391 Rosa chinensis HOM05D006787 ORTHO05D008366 2.5e-186 656.4 593 62.7
Hund22687 Selenicereus undatus HOM05D006787 ORTHO05D008366 7.2e-186 654.8 587 60.3
Cc03_g16180 Coffea canephora HOM05D006787 ORTHO05D008366 9.4e-186 654.4 693 54.0
QL10p065815 Quercus lobata HOM05D006787 ORTHO05D008366 1.6e-185 653.7 695 55.0
QL10p064688 Quercus lobata HOM05D006787 ORTHO05D008366 8.0e-185 651.4 688 54.9
Lalb_Chr10g0097341 Lupinus albus HOM05D006787 ORTHO05D008366 3.0e-184 649.4 650 56.6
Ciclev10019183m.g Citrus clementina HOM05D006787 ORTHO05D008366 5.2e-184 648.7 640 59.8
MBI10_g27212_MAGBIO Magnolia biondii HOM05D006787 ORTHO05D008366 6.8e-184 648.3 607 60.1
FvH4_1g00100 Fragaria vesca HOM05D006787 ORTHO05D008366 1.2e-183 647.5 611 61.5
Thhalv10016356m.g Eutrema salsugineum HOM05D006787 ORTHO05D008366 3.4e-183 646.0 587 59.6
MD11G1156300 Malus domestica HOM05D006787 ORTHO05D008366 5.7e-183 645.2 680 56.9
FAN23G2311 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.3e-182 641.3 621 60.7
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.8e-181 640.2 621 60.5
Atru.chr3.1966 Acer truncatum HOM05D006787 ORTHO05D008366 3.1e-181 639.4 601 62.1
SGA_v2.0_scaffold25G10734 Striga asiatica HOM05D006787 ORTHO05D008366 3.1e-181 639.4 673 57.2
PSO357G0106 Papaver somniferum HOM05D006787 ORTHO05D008366 2.0e-180 636.7 670 57.5
Eucgr.H00246 Eucalyptus grandis HOM05D006787 ORTHO05D008366 2.7e-180 636.3 583 58.1
Gohir.A06G175100 Gossypium hirsutum HOM05D006787 ORTHO05D008366 1.3e-179 634.0 597 60.0
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.7e-179 633.6 544 64.7
THA.LOC104800940 Tarenaya hassleriana HOM05D006787 ORTHO05D008366 2.9e-179 632.9 625 57.8
ClCG06G009900 Citrullus lanatus HOM05D006787 ORTHO05D008366 1.5e-178 630.6 589 57.2
Lj3g0015930 Lotus japonicus HOM05D006787 ORTHO05D008366 1.5e-178 630.6 648 54.3
Gorai.010G216300 Gossypium raimondii HOM05D006787 ORTHO05D008366 2.5e-178 629.8 597 59.5
AUR62023690 Chenopodium quinoa HOM05D006787 ORTHO05D008366 1.2e-177 627.5 588 56.8
EL10Ac3g06180 Beta vulgaris HOM05D006787 ORTHO05D008366 2.1e-177 626.7 596 59.9
COL.COLO4_07294 Corchorus olitorius HOM05D006787 ORTHO05D008366 4.7e-177 625.5 640 55.3
GSVIVG01038263001 Vitis vinifera HOM05D006787 ORTHO05D008366 8.0e-177 624.8 462 73.6
Duzib168G0144 Durio zibethinus HOM05D006787 ORTHO05D008366 1.0e-176 624.4 599 56.1
VMungo0331G0945 Vigna mungo HOM05D006787 ORTHO05D008366 2.3e-176 623.2 592 56.4
Glyma.07G076000 Glycine max HOM05D006787 ORTHO05D008366 4.0e-176 622.5 591 57.5
Glyma.03G015700 Glycine max HOM05D006787 ORTHO05D008366 8.9e-176 621.3 593 58.5
Phvul.010G093100 Phaseolus vulgaris HOM05D006787 ORTHO05D008366 8.9e-176 621.3 591 56.3
Gohir.D06G185000 Gossypium hirsutum HOM05D006787 ORTHO05D008366 4.9e-174 615.5 601 54.4
TPR.G1526 Trifolium pratense HOM05D006787 ORTHO05D008366 2.4e-173 613.2 603 55.4
PGR142G3161 Punica granatum HOM05D006787 ORTHO05D008366 2.7e-172 609.8 686 53.5
ECA248G2491 Erigeron canadensis HOM05D006787 ORTHO05D008366 4.6e-172 609.0 594 60.4
Medtr8g432340 Medicago truncatula HOM05D006787 ORTHO05D008366 7.8e-172 608.2 591 56.7
arahy.Tifrunner.gnm1.ann1.RN5NMY Arachis hypogaea HOM05D006787 ORTHO05D008366 5.0e-171 605.5 613 56.6
Hma1.2p1_0000F.1_g000310 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 5.0e-171 605.5 589 56.4
arahy.Tifrunner.gnm1.ann1.M1INQM Arachis hypogaea HOM05D006787 ORTHO05D008366 1.5e-170 604.0 597 57.3
SalBow5G4178 Salvia bowleyana HOM05D006787 ORTHO05D008366 3.3e-170 602.8 683 54.0
C03p21010 Brassica napus HOM05D006787 ORTHO05D008366 1.2e-169 600.9 538 62.8
Lsat_1_v5_gn_6_92560 Lactuca sativa HOM05D006787 ORTHO05D008366 1.2e-169 600.9 584 56.2
MELO3C008513.2 Cucumis melo HOM05D006787 ORTHO05D008366 1.6e-169 600.5 594 57.7
Ca_25786_v3 Cicer arietinum L. HOM05D006787 ORTHO05D008366 1.8e-168 597.0 631 53.2
CsaV3_2G011300 Cucumis sativus L. HOM05D006787 ORTHO05D008366 6.8e-168 595.1 605 56.9
Sc19g0002430 Simmondsia chinensis HOM05D006787 ORTHO05D008366 6.8e-168 595.1 587 58.8
CANSAT56G3581 Cannabis sativa HOM05D006787 ORTHO05D008366 8.9e-168 594.7 597 56.1
HanXRQChr12g0374641 Helianthus annuus HOM05D006787 ORTHO05D008366 2.6e-167 593.2 589 57.2
AUR62002496 Chenopodium quinoa HOM05D006787 ORTHO05D008366 1.3e-166 590.9 470 64.0
vmacro00728 Vaccinium macrocarpon HOM05D006787 ORTHO05D008366 1.7e-166 590.5 441 71.4
A03p17910 Brassica napus HOM05D006787 ORTHO05D008366 2.2e-166 590.1 547 61.2
HPP92_011440 Vanilla planifolia HOM05D006787 ORTHO05D008366 1.0e-163 581.3 591 56.7
ATR0743G046 Amborella trichopoda HOM05D006787 ORTHO05D008366 1.3e-163 580.9 625 54.4
Oeu014980.1 Olea europaea HOM05D006787 ORTHO05D008366 1.3e-163 580.9 528 64.0
Aqoxy4G00084 Aquilegia oxysepala HOM05D006787 ORTHO05D008366 4.3e-162 575.9 587 55.5
Os03g0425000 Oryza sativa ssp. japonica HOM05D006787 ORTHO05D008366 1.3e-158 564.3 551 57.2
Psat4g152520 Pisum sativum HOM05D006787 ORTHO05D008366 5.6e-154 548.9 588 53.9
Zm00001eb120920 Zea mays HOM05D006787 ORTHO05D008366 2.1e-145 520.4 548 55.1
COL.COLO4_16044 Corchorus olitorius HOM05D006787 ORTHO05D008366 3.4e-143 513.1 569 51.1
Sed0010252 Sechium edule HOM05D006787 ORTHO05D008366 7.6e-143 511.9 546 53.5
unitig_22.g5322 Utricularia gibba HOM05D006787 ORTHO05D008366 1.1e-136 491.5 625 50.7
TPR.G9807 Trifolium pratense HOM05D006787 ORTHO05D008366 1.0e-131 474.9 588 45.4
SEGI_12983 Sequoiadendron giganteum HOM05D006787 ORTHO05D008366 5.5e-117 426.0 615 46.2
BcaB01g04009 Brassica carinata HOM05D006787 ORTHO05D008366 3.2e-93 347.1 284 59.9
Mapoly0069s0042 Marchantia polymorpha HOM05D006787 ORTHO05D008366 2.7e-71 274.2 631 33.0
Mapoly0276s0001 Marchantia polymorpha HOM05D006787 ORTHO05D008366 2.7e-71 274.2 631 33.0
Pp3c3_28000 Physcomitrium patens HOM05D006787 ORTHO05D008366 1.0e-70 272.3 447 43.4
AagrBONN_evm.TU.Sc2ySwM_344.5468 Anthoceros agrestis HOM05D006787 ORTHO05D008366 2.7e-55 221.1 426 35.4
AagrBONN_evm.TU.Sc2ySwM_344.5464 Anthoceros agrestis HOM05D006787 ORTHO05D008366 3.6e-28 131.0 195 43.1
SMO137G0272 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 2.2e-25 121.7 144 51.4
BcaC04g19536 Brassica carinata HOM05D006787 ORTHO05D008366 3.5e-23 114.4 143 45.5
CBR_g41140 Chara braunii HOM05D006787 ORTHO05D008366 1.2e-15 89.4 193 31.6
PRCOL_00001133 Prasinoderma coloniale HOM05D006787 ORTHO05D008366 1.9e-13 82.0 133 37.6
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.5e-10 72.4 139 36.0
Cre09.g389541 Chlamydomonas reinhardtii HOM05D006787 ORTHO05D008366 2.0e-10 72.0 105 34.3
SMO137G0070 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 4.5e-10 70.9 99 48.5
VMungo0720G2947 Vigna mungo HOM05D006787 ORTHO05D008366 1.7e-09 68.9 76 47.4
SMO137G0174 Selaginella moellendorffii HOM05D066076 ORTHO05D008366 8.4e-09 66.6 50 50.0
Cre10.g459350 Chlamydomonas reinhardtii HOM05D006787 ORTHO05D008366 3.2e-08 64.7 203 28.6
SMO134G0111 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 5.5e-08 63.9 126 38.9
SMO137G0071 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 2.7e-07 61.6 84 32.1
Cre13.g588201 Chlamydomonas reinhardtii HOM05D063782 ORTHO05D044138 2.3e-06 58.5 45 53.3


User provided reference genes

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