Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 7.2e-69 263.8 138 100.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 6.7e-67 257.3 138 97.1
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.1e-52 209.1 137 79.6
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 6.1e-52 207.6 137 80.3
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.0e-51 205.3 138 84.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.0e-47 192.6 136 76.5
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.0e-46 190.3 137 75.2
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.3e-46 189.9 145 73.1
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.9e-46 188.7 138 74.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.9e-46 188.7 145 72.4
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 3.8e-46 188.3 136 72.1
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 3.8e-46 188.3 135 72.6
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 137 73.7
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 137 73.0
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 8.5e-46 187.2 138 74.6
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 8.5e-46 187.2 138 74.6
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.5e-45 186.4 136 75.0
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.5e-45 185.7 140 69.3
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.2e-45 185.3 135 71.9
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 3.2e-45 185.3 137 72.3
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 3.2e-45 185.3 135 72.6
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 4.2e-45 184.9 132 73.5
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.5e-45 184.5 136 73.5
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 9.4e-45 183.7 136 72.8
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 9.4e-45 183.7 136 72.8
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 9.4e-45 183.7 139 72.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 1.2e-44 183.3 136 71.3
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.2e-44 183.3 137 72.3
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.6e-44 183.0 137 73.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.1e-44 182.6 137 70.1
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 2.1e-44 182.6 137 69.3
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.7e-44 182.2 138 68.8
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.7e-44 182.2 138 73.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.7e-44 182.2 138 71.7
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 3.6e-44 181.8 137 71.5
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 3.6e-44 181.8 137 70.8
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 4.7e-44 181.4 136 72.8
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 6.1e-44 181.0 136 71.3
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 8.0e-44 180.6 133 71.4
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 8.0e-44 180.6 137 71.5
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 8.0e-44 180.6 137 71.5
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.0e-43 180.3 151 68.2
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 1.0e-43 180.3 136 70.6
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.0e-43 180.3 137 71.5
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.0e-43 180.3 135 71.9
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.0e-43 180.3 135 71.9
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.4e-43 179.9 138 70.3
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.4e-43 179.9 145 67.6
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.8e-43 179.5 138 71.0
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.8e-43 179.5 138 68.8
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-43 179.5 138 68.8
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.8e-43 179.5 138 68.8
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.8e-43 179.5 137 70.8
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.8e-43 179.5 136 71.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 1.8e-43 179.5 137 68.6
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.8e-43 179.5 136 69.9
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 4.0e-43 178.3 135 70.4
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 4.0e-43 178.3 136 69.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 5.2e-43 177.9 138 68.8
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 5.2e-43 177.9 137 70.8
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.2e-43 177.9 137 70.8
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 8.8e-43 177.2 135 70.4
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 8.8e-43 177.2 144 69.4
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.2e-42 176.8 137 68.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.5e-42 176.4 138 66.7
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 2.0e-42 176.0 138 68.1
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 2.0e-42 176.0 138 68.1
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 2.0e-42 176.0 136 69.9
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.0e-42 176.0 134 71.6
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.0e-42 176.0 137 69.3
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.0e-42 176.0 134 69.4
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.6e-42 175.6 135 68.9
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 4.4e-42 174.9 139 69.8
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 4.4e-42 174.9 135 70.4
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 5.7e-42 174.5 138 67.4
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 5.7e-42 174.5 135 68.9
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 5.7e-42 174.5 132 68.9
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 7.5e-42 174.1 134 69.4
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 7.5e-42 174.1 133 69.9
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 9.8e-42 173.7 139 66.9
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 9.8e-42 173.7 139 66.9
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 9.8e-42 173.7 136 66.9
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.8e-42 173.7 139 68.3
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 9.8e-42 173.7 133 69.9
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-41 173.3 138 66.7
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.3e-41 173.3 138 65.9
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.7e-41 172.9 134 70.1
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.7e-41 172.9 138 65.9
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.2e-41 172.6 135 68.9
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.2e-41 172.6 135 68.9
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.2e-41 172.6 135 68.9
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.2e-41 172.6 135 68.9
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.2e-41 172.6 135 68.9
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 2.2e-41 172.6 139 71.2
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.2e-41 172.6 134 67.2
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.8e-41 172.2 139 66.9
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.8e-41 172.2 139 66.9
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.8e-41 172.2 139 66.9
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.8e-41 172.2 139 66.9
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.8e-41 172.2 132 68.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 2.8e-41 172.2 133 70.7
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.7e-41 171.8 140 67.9
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.7e-41 171.8 136 68.4
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.8e-41 171.4 135 66.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 4.8e-41 171.4 139 69.8
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.3e-41 171.0 132 68.2
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 6.3e-41 171.0 133 69.2
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 6.3e-41 171.0 133 69.2
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.3e-41 171.0 143 66.4
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 8.3e-41 170.6 137 67.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.1e-40 170.2 140 67.9
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 1.4e-40 169.9 136 68.4
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.8e-40 169.5 140 66.4
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.8e-40 169.5 143 66.4
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.8e-40 169.5 138 65.2
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.4e-40 169.1 138 66.7
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.4e-40 169.1 139 70.5
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 4.1e-40 168.3 140 65.0
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 5.4e-40 167.9 143 67.8
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 7.0e-40 167.5 134 69.4
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 7.0e-40 167.5 133 65.4
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.0e-40 167.5 136 66.2
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.2e-39 166.8 137 65.7
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.2e-39 166.8 137 65.7
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 2.0e-39 166.0 127 70.1
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.3e-38 163.3 135 66.7
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.7e-38 162.9 112 75.0
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.2e-38 162.5 134 66.4
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.5e-37 159.8 137 63.5
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 1.5e-37 159.8 132 65.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.5e-37 159.1 137 65.0
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 3.2e-37 158.7 141 62.4
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 3.2e-37 158.7 141 62.4
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.2e-37 158.3 134 64.9
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 9.4e-37 157.1 134 67.9
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.6e-36 155.2 136 61.8
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 3.6e-36 155.2 95 80.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.4e-35 153.3 137 62.0
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.8e-35 152.9 101 73.3
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 8.8e-35 150.6 106 68.9
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.4e-34 148.7 88 81.8
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 3.7e-33 145.2 129 62.0
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.1e-32 143.7 143 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.3e-30 136.0 119 60.5
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 3.8e-30 135.2 134 54.5
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 8.6e-30 134.0 106 66.0
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-29 133.7 107 65.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.5e-29 133.3 150 56.0
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.3e-29 132.1 103 65.0
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.6e-28 129.8 156 52.6
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.0e-27 125.2 131 58.8
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.2e-27 124.8 135 51.9
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.8e-27 124.4 127 61.4
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-24 117.1 130 56.2
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 5.0e-22 108.2 68 73.5
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 4.3e-21 105.1 86 68.6
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 9.5e-21 104.0 53 90.6
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.2e-20 103.6 85 65.9
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.2e-20 103.6 138 50.0
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 8.0e-20 100.9 139 42.4
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 7.5e-18 94.4 80 65.0
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.6e-15 86.7 50 82.0
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.0e-15 86.3 144 42.4
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 9.8e-10 67.4 75 56.0
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.3e-06 57.0 32 90.6


User provided reference genes

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