Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 0.0e+00 1617.1 818 100.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 0.0e+00 1593.6 818 98.4
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 0.0e+00 1277.3 829 79.0
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 0.0e+00 1120.1 834 72.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.2e-289 996.9 817 66.1
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.6e-272 943.0 834 59.8
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.6e-269 931.8 834 59.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.2e-264 916.8 833 58.8
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.5e-254 882.5 823 58.3
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-252 877.1 866 56.6
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 4.0e-252 875.2 817 58.6
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-233 813.9 850 53.6
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-222 777.3 806 53.8
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 7.2e-217 758.1 846 50.6
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 8.2e-213 744.6 787 51.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.7e-205 720.3 807 49.1
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 4.1e-204 715.7 832 49.4
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.2e-201 704.9 831 52.2
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.3e-198 696.0 819 48.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 7.5e-198 694.9 865 47.6
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 2.4e-196 689.9 821 48.4
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 3.1e-196 689.5 821 47.6
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 4.7e-184 649.0 849 46.2
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.5e-182 644.0 834 45.6
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.7e-181 640.6 862 45.5
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.1e-180 636.0 826 45.9
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 5.4e-180 635.6 783 47.4
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.3e-173 614.4 798 45.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 9.2e-172 608.2 762 46.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.2e-168 597.8 863 41.4
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 8.0e-168 595.1 786 44.5
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 4.1e-164 582.8 827 41.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 7.0e-164 582.0 858 41.8
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.0e-164 582.0 795 42.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.2e-163 581.3 824 41.1
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.0e-162 578.2 824 40.7
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.3e-162 577.0 824 40.5
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.6e-162 575.1 852 40.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.2e-160 568.9 785 43.6
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 8.1e-160 568.5 814 42.6
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.6e-158 563.5 852 42.5
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 6.4e-157 558.9 806 40.4
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.9e-156 557.4 820 41.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 7.1e-156 555.4 821 41.8
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.3e-154 551.2 850 41.1
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 6.6e-154 548.9 731 46.5
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.5e-153 547.0 813 41.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.3e-153 546.6 838 40.2
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 4.3e-153 546.2 832 39.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 7.3e-153 545.4 814 40.8
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 9.5e-153 545.0 827 40.4
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.1e-152 543.9 863 40.6
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 6.2e-152 542.3 811 40.1
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 3.1e-151 540.0 895 38.3
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 3.1e-151 540.0 821 40.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.8e-150 535.8 837 39.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-149 533.9 804 40.8
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.7e-147 526.9 837 39.4
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 3.9e-146 523.1 828 39.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 6.6e-146 522.3 803 41.0
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 6.2e-144 515.8 813 39.6
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.4e-143 514.6 815 39.4
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 3.1e-143 513.5 829 38.6
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 4.0e-143 513.1 799 39.9
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.0e-143 513.1 828 38.6
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 6.9e-143 512.3 800 39.8
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.4e-142 510.0 743 44.3
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.7e-141 507.7 813 38.4
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.9e-140 504.2 1007 34.7
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.1e-139 500.7 831 38.5
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.7e-138 497.7 829 37.4
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 9.6e-137 491.9 828 37.9
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 3.4e-134 483.4 867 36.4
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.2e-133 480.7 934 35.8
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 2.4e-132 477.2 933 35.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.6e-131 474.6 836 37.8
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.6e-131 474.6 995 33.2
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.0e-131 472.6 835 37.4
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 3.3e-129 466.8 807 36.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 5.6e-129 466.1 841 38.2
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.0e-126 457.6 788 36.5
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.0e-126 457.6 927 34.8
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.6e-126 457.2 835 36.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.9e-124 451.1 916 34.8
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.6e-118 429.1 806 33.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.2e-117 427.6 829 34.5
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 5.5e-116 422.9 802 35.0
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.3e-114 418.3 808 35.0
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.8e-114 417.9 557 42.9
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.8e-114 417.9 820 34.5
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.5e-113 414.8 972 32.8
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.3e-113 413.3 813 33.5
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 7.4e-113 412.5 829 34.3
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 8.2e-112 409.1 806 34.7
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.5e-108 397.5 777 34.0
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.2e-108 397.1 522 47.1
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 4.8e-104 383.3 658 35.6
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.0e-90 337.4 876 32.2
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 5.9e-86 323.2 616 35.6
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.7e-85 321.6 867 28.8
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.0e-85 320.1 676 35.4
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.1e-84 318.9 721 34.0
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 1.5e-84 318.5 482 38.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 3.0e-82 310.8 666 33.2
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 7.7e-78 296.2 492 38.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.0e-77 295.8 484 39.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.9e-77 294.3 485 38.4
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.8e-77 293.9 791 31.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.1e-76 292.4 559 34.5
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 3.2e-76 290.8 663 33.2
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.0e-74 285.8 491 37.3
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.0e-74 283.9 482 37.6
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.8e-72 277.7 411 42.8
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 8.3e-72 276.2 508 36.6
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 3.1e-71 274.2 487 37.6
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 2.7e-70 271.2 440 38.4
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 2.7e-70 271.2 440 38.4
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.7e-70 271.2 508 34.6
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 5.9e-70 270.0 781 27.8
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.6e-67 261.9 798 29.7
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 4.7e-67 260.4 439 39.6
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.0e-66 259.2 502 33.7
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 5.7e-65 253.4 825 27.3
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 2.2e-64 251.5 667 31.0
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.7e-64 250.8 644 31.1
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 6.3e-64 250.0 671 30.8
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 8.3e-64 249.6 348 40.5
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 8.3e-64 249.6 445 35.7
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.2e-62 245.7 648 30.9
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.7e-62 244.6 816 26.7
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.5e-62 244.2 293 48.8
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.3e-61 242.3 643 30.3
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 5.6e-60 236.9 136 92.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.6e-60 236.9 829 26.1
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 9.5e-60 236.1 495 35.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.6e-59 235.3 664 31.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.8e-59 234.6 661 30.0
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 4.7e-59 233.8 661 30.1
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.8e-58 231.9 619 30.0
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.4e-57 227.3 665 30.8
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 6.0e-54 216.9 630 31.1
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 7.8e-54 216.5 463 35.4
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.6e-46 192.2 492 30.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 4.3e-44 184.1 490 27.1
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 5.2e-42 177.2 279 42.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.3e-37 161.8 191 50.3
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.2e-35 156.0 826 23.5
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 3.4e-33 147.9 105 61.0
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.8e-32 144.4 448 25.4
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 3.2e-31 141.4 395 32.9
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 2.1e-30 138.7 182 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.7e-29 135.6 728 22.3
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 5.1e-29 134.0 100 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.4e-18 98.6 187 29.4
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.3e-18 97.4 100 46.0
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.0e-13 83.2 83 51.8
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 6.7e-13 80.5 103 49.5
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.8e-11 74.3 77 40.3
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.1e-10 71.6 81 39.5
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 9.0e-10 70.1 120 31.7
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 8.4e-08 63.5 49 63.3
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-07 60.5 64 39.1
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 2.7e-06 58.5 64 42.2


User provided reference genes

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