Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 0.0e+00 1296.2 664 100.0
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 0.0e+00 1289.6 664 99.4
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 0.0e+00 1262.7 664 97.1
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 0.0e+00 1203.3 664 91.9
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 0.0e+00 1189.9 669 91.0
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 0.0e+00 1176.4 672 89.9
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 0.0e+00 1104.4 636 88.7
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 5.9e-278 960.7 667 72.9
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 3.7e-264 914.8 667 69.6
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 9.2e-263 910.2 668 69.5
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.3e-256 889.8 665 68.7
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.2e-256 889.0 683 67.2
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.2e-256 889.0 683 67.2
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 3.3e-252 875.2 667 67.0
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 8.9e-250 867.1 659 66.9
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 4.4e-249 864.8 666 66.4
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 4.4e-249 864.8 767 61.8
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 1.6e-246 856.3 664 66.0
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 6.0e-246 854.4 669 66.4
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.3e-245 853.2 672 68.8
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 6.6e-245 850.9 657 66.1
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 1.1e-244 850.1 671 65.7
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 2.5e-244 849.0 679 64.5
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 3.6e-243 845.1 668 65.6
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 4.7e-243 844.7 692 64.7
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 8.1e-243 844.0 669 66.7
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.2e-241 840.1 642 67.0
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 4.9e-240 834.7 670 64.6
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.1e-239 833.6 633 67.8
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 6.0e-238 827.8 669 64.1
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 7.8e-238 827.4 663 64.6
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.7e-237 826.2 666 63.4
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.3e-237 825.9 663 64.4
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 3.9e-237 825.1 662 64.4
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 2.5e-236 822.4 670 65.7
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.6e-235 819.7 666 64.1
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 1.8e-234 816.2 666 63.2
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.1e-234 815.5 663 65.0
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 3.4e-233 812.0 673 63.0
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 9.9e-233 810.4 741 57.9
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.3e-232 810.1 658 62.9
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 1.7e-232 809.7 664 63.0
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.7e-232 809.7 663 64.7
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 1.7e-232 809.7 585 70.4
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 6.4e-232 807.7 670 64.6
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.2e-230 803.5 674 63.9
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.5e-228 795.8 643 64.1
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.4e-226 790.0 669 63.4
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.1e-226 788.9 674 63.1
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 1.2e-225 786.9 669 62.6
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 7.6e-225 784.3 666 62.5
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 4.9e-224 781.6 671 62.3
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 1.9e-223 779.6 663 61.5
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 3.2e-223 778.9 673 61.4
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 7.1e-223 777.7 669 62.6
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 4.6e-222 775.0 639 63.1
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 6.0e-222 774.6 665 61.2
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 9.6e-220 767.3 666 59.6
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 2.8e-219 765.8 660 61.7
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.1e-218 763.8 669 59.6
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 2.6e-217 759.2 663 59.0
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 4.2e-215 751.9 667 61.3
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 5.4e-215 751.5 660 60.8
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 5.4e-215 751.5 924 46.9
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 9.3e-215 750.7 658 60.6
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 1.6e-214 750.0 663 59.9
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 2.3e-213 746.1 663 59.1
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 3.9e-213 745.3 663 60.0
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 7.4e-212 741.1 658 59.7
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.3e-211 740.3 663 60.2
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 6.9e-210 734.6 677 57.3
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 2.6e-209 732.6 659 59.6
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 5.8e-209 731.5 658 59.0
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.9e-207 726.5 674 59.3
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 7.1e-207 724.5 659 59.0
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 9.3e-207 724.2 666 58.4
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 9.3e-207 724.2 663 58.8
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 4.6e-206 721.8 664 57.5
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 2.3e-205 719.5 661 57.5
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 3.9e-205 718.8 659 58.4
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 5.1e-205 718.4 663 58.1
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 6.7e-205 718.0 664 57.4
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 8.7e-205 717.6 661 57.3
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.9e-204 716.5 658 57.4
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.3e-204 715.7 665 57.0
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 7.4e-204 714.5 664 59.2
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 9.6e-204 714.1 663 57.6
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 1.3e-203 713.8 665 57.4
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 1.3e-203 713.8 663 57.5
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 6.2e-203 711.4 666 56.2
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 1.4e-199 700.3 666 57.5
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 2.6e-193 679.5 657 54.9
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 2.0e-188 663.3 673 52.9
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 3.4e-185 652.5 631 54.7
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 7.9e-182 641.3 681 51.8
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 1.8e-181 640.2 727 50.6
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 9.1e-170 601.3 693 51.2
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 3.8e-168 595.9 676 49.1
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 2.2e-163 580.1 555 55.5
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 2.7e-161 573.2 665 48.0
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 2.9e-160 569.7 491 59.7
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 2.2e-155 553.5 672 45.4
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 2.8e-155 553.1 724 43.9
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 9.5e-151 538.1 518 53.9
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 7.8e-129 465.3 545 47.0
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 6.2e-94 349.4 302 61.9
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 1.1e-93 348.6 720 33.2
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 1.7e-83 314.7 537 38.5
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.2e-81 308.5 669 33.2
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 5.1e-80 303.1 304 56.6
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 1.9e-79 301.2 659 30.7
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.5e-58 231.1 170 69.4
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 4.0e-48 197.2 479 31.5
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.2e-47 195.7 143 71.3
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.6e-47 194.5 357 38.7
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 7.0e-45 186.4 181 55.2
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 1.3e-38 165.6 140 62.9
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 1.0e-32 146.0 85 80.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.1e-29 136.0 342 35.7
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.2e-28 132.5 104 75.0
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.2e-25 122.5 166 48.2
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.6e-25 122.1 213 35.2
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.1e-25 121.7 73 79.5
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.2e-21 107.8 69 73.9
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 5.8e-15 87.0 52 73.1
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 4.9e-14 84.0 49 81.6
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 8.1e-09 66.6 75 46.7
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 8.1e-09 66.6 37 89.2
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 4.0e-08 64.3 37 86.5
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 7.6e-07 60.1 113 34.5


User provided reference genes

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