Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 0.0e+00 1399.8 708 100.0
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 0.0e+00 1192.6 640 95.0
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 0.0e+00 1139.0 712 83.1
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 0.0e+00 1131.7 710 83.1
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 0.0e+00 1087.4 723 79.3
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 1.9e-221 773.1 713 57.4
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 3.4e-215 752.3 716 56.1
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 6.6e-211 738.0 728 55.2
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 6.2e-209 731.5 793 51.7
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 4.5e-207 725.3 706 56.1
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 7.9e-204 714.5 670 55.8
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 3.9e-203 712.2 654 58.9
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 5.6e-202 708.4 368 97.6
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 6.2e-201 704.9 716 53.4
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 1.2e-199 700.7 717 54.1
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 1.0e-198 697.6 729 52.1
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 6.5e-198 694.9 616 58.9
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 1.2e-196 690.6 660 55.8
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 4.6e-196 688.7 665 55.8
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 2.1e-193 679.9 692 53.6
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 8.4e-190 667.9 715 51.7
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 9.3e-189 664.5 710 50.3
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 4.6e-188 662.1 712 51.7
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 2.3e-187 659.8 345 95.7
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 3.0e-187 659.4 720 50.7
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 1.1e-186 657.5 616 56.2
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.1e-186 657.5 662 53.6
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 2.5e-186 656.4 716 50.4
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 2.5e-186 656.4 636 52.7
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 5.7e-186 655.2 719 51.3
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 1.1e-184 651.0 725 49.9
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 1.4e-184 650.6 717 50.6
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 1.4e-184 650.6 654 53.7
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.4e-184 649.8 714 48.9
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 2.4e-184 649.8 642 54.4
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 2.4e-184 649.8 725 49.8
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 3.1e-184 649.4 716 50.1
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 3.1e-184 649.4 718 51.3
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 5.3e-184 648.7 714 48.7
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 5.3e-184 648.7 714 49.0
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 1.2e-183 647.5 721 50.5
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 2.0e-183 646.7 696 52.3
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 3.4e-183 646.0 663 52.6
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 4.5e-183 645.6 719 49.4
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 4.5e-183 645.6 714 48.6
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 1.7e-182 643.7 668 52.7
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 1.7e-182 643.7 683 52.6
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 1.7e-182 643.7 717 49.9
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 2.2e-182 643.3 687 50.2
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 3.8e-182 642.5 633 55.8
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 5.0e-182 642.1 649 53.5
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.4e-181 640.6 719 49.4
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 5.5e-181 638.6 681 52.0
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.1e-178 630.9 719 49.2
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 2.5e-178 629.8 712 49.2
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 5.7e-178 628.6 716 49.3
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 8.2e-177 624.8 620 56.3
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.4e-176 624.0 679 51.7
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 5.0e-174 615.5 707 48.7
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 1.1e-173 614.4 717 49.0
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 3.2e-173 612.8 644 52.2
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 3.2e-173 612.8 734 48.0
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 5.5e-173 612.1 712 48.5
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 9.4e-173 611.3 715 49.1
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 2.3e-171 606.7 637 53.1
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 6.7e-171 605.1 755 46.0
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 3.3e-170 602.8 713 47.4
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 5.7e-170 602.1 709 49.5
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 7.4e-170 601.7 632 51.3
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 3.7e-169 599.4 668 51.2
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 4.8e-169 599.0 696 48.0
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 1.1e-168 597.8 715 48.3
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 2.4e-168 596.7 677 48.9
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 1.2e-167 594.3 695 48.2
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 1.2e-167 594.3 695 48.2
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 2.2e-166 590.1 717 46.6
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 2.9e-166 589.7 696 47.6
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 2.6e-154 550.1 370 74.3
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 3.1e-152 543.1 625 48.3
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 1.3e-150 537.7 550 52.0
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 6.5e-150 535.4 729 43.6
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 3.1e-144 516.5 493 56.6
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 1.2e-143 514.6 692 44.8
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 2.7e-143 513.5 476 56.5
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 7.7e-143 511.9 610 49.0
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 5.0e-142 509.2 641 47.1
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 1.5e-141 507.7 342 77.5
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 8.0e-140 501.9 641 47.7
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 1.8e-139 500.7 492 54.7
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 4.1e-136 489.6 529 52.4
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 2.3e-134 483.8 610 47.5
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 1.5e-133 481.1 528 51.5
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 8.6e-126 455.3 504 50.8
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 3.1e-123 446.8 368 63.0
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 1.9e-120 437.6 381 58.3
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 1.1e-117 428.3 314 67.8
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 8.1e-116 422.2 660 41.5
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 4.4e-106 389.8 297 63.6
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 2.7e-103 380.6 405 52.8
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 5.1e-102 376.3 253 79.8
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 1.9e-96 357.8 651 37.3
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 3.9e-94 350.1 305 59.0
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 2.5e-85 320.9 700 32.0
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 2.1e-76 291.2 638 34.3
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 4.6e-71 273.5 610 33.1
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 4.3e-69 266.9 316 49.1
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 1.6e-68 265.0 556 33.3
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 4.8e-60 236.9 325 41.2
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 7.7e-58 229.6 383 39.7
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.8e-54 218.4 199 63.3
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 8.5e-49 199.5 329 40.7
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 3.0e-46 191.0 146 60.3
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 1.6e-42 178.7 185 49.7
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 3.2e-40 171.0 187 48.7
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-39 168.7 279 38.0
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 6.1e-39 166.8 130 61.5
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 3.5e-34 151.0 117 62.4
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.4e-27 129.0 133 48.1
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 2.3e-25 121.7 171 41.5
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 2.3e-22 111.7 133 48.1
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 7.5e-21 106.7 305 30.2
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.1e-16 92.8 78 53.8
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 9.5e-16 89.7 77 55.8
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 3.1e-14 84.7 193 32.1
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 4.4e-13 80.9 119 40.3
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 4.1e-11 74.3 237 28.3
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 9.2e-11 73.2 209 28.2
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 1.1e-08 66.2 115 38.3


User provided reference genes

Program Settings