Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 2095.5 1093 100.0
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1892.1 1109 90.4
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1854.0 1144 86.9
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1506.9 1137 71.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1481.8 1133 70.6
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1479.5 1162 69.3
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1466.1 1143 68.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1458.4 1133 70.1
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1455.7 1127 69.2
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1446.0 1134 69.6
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1438.7 1143 68.4
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1434.1 1088 69.9
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1425.2 1093 70.0
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 0.0e+00 1424.5 879 88.5
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1421.0 1129 68.0
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1408.3 1147 68.4
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1401.7 1104 68.4
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1401.7 1113 67.3
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1401.0 1125 68.0
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1399.8 1142 66.5
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1395.9 1148 66.0
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1395.9 1085 69.1
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1391.3 1129 67.0
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1389.4 1114 67.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1387.9 1103 68.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1387.5 1142 66.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1386.7 1119 66.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1382.1 1102 68.1
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1382.1 1123 66.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1381.7 1147 66.8
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1380.9 1085 68.1
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1380.5 1199 64.1
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1379.4 1084 68.6
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1377.1 1138 66.5
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1370.5 1111 67.0
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1370.1 1100 66.2
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1368.6 1098 67.2
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1367.4 1096 66.7
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1366.7 1281 60.3
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1365.9 1116 65.8
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1364.0 1111 65.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1362.4 1136 66.0
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1358.6 1114 65.7
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1358.6 1099 66.5
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1357.8 1117 65.9
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1357.8 1113 66.4
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1355.1 1170 65.1
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1354.0 1115 65.7
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1353.6 1107 67.4
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1349.3 1108 66.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1346.3 1103 66.9
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1344.7 1072 68.3
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1344.3 1129 65.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1343.6 1127 65.1
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1343.2 1119 64.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1342.8 1118 65.2
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1335.9 1074 66.6
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1332.4 1090 66.1
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1331.2 1130 63.7
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1328.9 1100 65.7
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1317.4 1109 65.5
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1311.2 1123 64.3
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1307.7 1153 63.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1306.2 1115 64.1
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1305.8 1111 63.8
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1303.9 1111 63.0
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1303.9 1123 62.5
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1290.4 1127 62.7
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1288.9 1109 63.1
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1282.3 1117 62.6
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1278.5 1116 62.9
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1276.9 1116 62.3
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1276.9 1133 61.9
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1267.3 1116 61.6
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1266.1 1122 61.9
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1264.2 1113 61.7
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1256.1 1078 62.5
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1249.2 1378 54.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1247.6 1078 62.2
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1224.5 1133 60.3
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1224.2 1078 61.2
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1222.6 1143 60.2
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1217.2 1067 61.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1211.8 1078 60.8
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1211.4 1080 60.5
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1209.5 1101 61.7
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1205.7 1079 60.4
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1203.3 1070 60.7
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1166.8 989 66.4
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1152.1 1062 58.7
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1144.4 1071 58.5
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1136.3 920 66.6
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1134.0 921 66.4
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1100.1 1072 58.3
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1090.5 1073 57.0
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1076.2 1108 56.4
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 3.8e-306 1055.0 934 60.4
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.2e-299 1033.5 950 62.6
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 2.6e-299 1032.3 928 62.3
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 7.7e-299 1030.8 1007 59.6
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.9e-288 994.2 1020 58.0
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.9e-273 946.4 1037 53.8
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.2e-245 853.2 874 58.0
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.4e-231 807.4 968 52.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.8e-229 799.3 768 60.0
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.0e-226 791.2 773 59.6
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 2.7e-219 766.5 631 62.4
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 5.6e-217 758.8 1124 41.1
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.8e-216 756.5 1120 41.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.0e-214 750.4 1072 41.0
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.8e-214 748.8 1119 40.3
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 8.4e-213 745.0 1124 39.3
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 3.2e-212 743.0 680 59.9
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 6.9e-207 725.3 890 50.9
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 8.2e-200 701.8 520 69.2
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 6.5e-189 665.6 1028 38.7
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.1e-186 656.0 527 64.9
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-172 611.7 657 55.6
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 4.4e-169 599.7 518 60.8
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-156 558.1 418 72.5
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 5.5e-156 556.2 417 71.7
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.9e-140 504.6 402 69.9
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 7.3e-124 449.5 467 55.0
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.2e-121 442.2 227 95.2
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 2.5e-116 424.5 372 62.6
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 7.3e-116 422.9 347 66.0
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.3e-100 370.5 657 40.2
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.1e-94 351.7 351 53.8
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 6.0e-94 350.1 824 31.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.1e-87 329.3 186 81.2
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.0e-85 322.8 405 51.6
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 3.8e-72 277.7 536 36.8
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.4e-71 275.8 232 66.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.6e-70 272.3 1027 24.0
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.1e-70 271.9 190 78.9
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 3.0e-69 268.1 1246 23.1
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 2.4e-66 258.5 141 86.5
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.7e-64 252.3 195 62.1
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-63 249.6 141 86.5
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.5e-63 248.4 190 68.9
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.5e-63 248.4 142 81.7
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.8e-59 234.2 162 80.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 4.1e-58 231.1 241 53.1
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 4.7e-54 217.6 253 49.0
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 5.2e-53 214.2 118 85.6
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.4e-50 206.1 116 82.8
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.0e-48 199.9 116 79.3
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.3e-45 188.7 504 32.5
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.3e-43 183.0 140 71.4
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.8e-43 181.8 171 66.1
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.8e-43 181.8 171 66.1
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 3.2e-39 168.3 145 57.9
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 6.1e-38 164.1 134 73.9
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.8e-37 162.5 1136 21.5
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 2.6e-36 158.7 134 64.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 5.7e-36 157.5 134 70.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 8.3e-35 153.7 82 85.4
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 5.4e-34 151.0 83 81.9
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 9.1e-34 150.2 161 53.4
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.7e-32 146.0 83 79.5
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 2.1e-30 139.0 119 70.6
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.4e-29 136.3 110 67.3
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.2e-27 129.0 110 58.2
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.7e-27 128.3 88 80.7
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 2.7e-25 122.1 150 47.3
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 5.9e-25 120.9 115 58.3
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-24 119.4 145 49.0
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 5.0e-24 117.9 144 56.9
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.8e-21 109.4 102 54.9
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 3.4e-20 105.1 85 60.0
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.1e-18 98.2 95 54.7
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 2.7e-17 95.5 87 55.2
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 4.4e-12 78.2 78 56.4
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.4e-10 73.2 43 81.4
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 9.2e-10 70.5 59 62.7
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 6.6e-08 64.3 45 66.7


User provided reference genes

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