Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 4.2e-46 187.6 89 100.0
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 4.2e-46 187.6 89 100.0
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 7.9e-45 183.3 89 96.6
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.0e-44 183.0 89 96.6
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.4e-44 182.6 89 96.6
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.8e-44 182.2 89 96.6
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.8e-44 182.2 89 96.6
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 2.3e-44 181.8 89 95.5
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 95.5
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 97.8
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 95.5
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 95.5
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 95.5
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 6.7e-44 180.3 89 95.5
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 95.5
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 94.4
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 94.4
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 94.4
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 94.4
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 95.5
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 94.4
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 94.4
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 94.4
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 94.4
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 95.5
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 95.5
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 94.4
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 94.4
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.5e-43 179.1 88 94.3
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 92.1
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 92.1
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 93.3
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 93.3
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 95.5
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 3.3e-43 177.9 89 93.3
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.3e-43 177.9 89 95.5
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 4.4e-43 177.6 89 93.3
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 7.4e-43 176.8 89 92.1
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 7.4e-43 176.8 88 93.2
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.4e-43 176.8 89 93.3
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 9.7e-43 176.4 89 93.3
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 9.7e-43 176.4 89 93.3
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 9.7e-43 176.4 89 92.1
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.3e-42 176.0 85 94.1
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 93.3
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.7e-42 175.6 89 93.3
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.7e-42 175.6 90 95.6
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.7e-42 175.6 89 92.1
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.2e-42 175.3 87 94.3
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 3.7e-42 174.5 86 93.0
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 3.7e-42 174.5 86 93.0
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 3.7e-42 174.5 90 93.3
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 93.3
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 93.3
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 92.1
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 3.7e-42 174.5 87 94.3
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 92.1
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 4.8e-42 174.1 86 91.9
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 4.8e-42 174.1 88 89.8
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.3e-42 173.7 82 97.6
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.3e-42 173.7 82 97.6
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 8.2e-42 173.3 89 92.1
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 8.2e-42 173.3 85 95.3
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 8.2e-42 173.3 85 92.9
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 8.2e-42 173.3 89 92.1
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.1e-41 172.9 87 93.1
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.1e-41 172.9 85 94.1
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 1.8e-41 172.2 88 89.8
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 1.8e-41 172.2 81 97.5
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 2.4e-41 171.8 86 90.7
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 2.4e-41 171.8 89 89.9
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.4e-41 171.8 90 92.2
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 3.1e-41 171.4 86 91.9
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 3.1e-41 171.4 91 91.2
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 4.1e-41 171.0 89 88.8
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 4.1e-41 171.0 89 92.1
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.1e-41 171.0 89 92.1
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.1e-41 171.0 89 92.1
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 5.3e-41 170.6 90 91.1
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 5.3e-41 170.6 91 90.1
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 5.3e-41 170.6 80 97.5
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 5.3e-41 170.6 80 97.5
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 5.3e-41 170.6 82 95.1
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 7.0e-41 170.2 82 95.1
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 9.1e-41 169.9 85 91.8
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 1.2e-40 169.5 80 97.5
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.2e-40 169.5 85 90.6
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 1.2e-40 169.5 85 90.6
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.5e-40 169.1 85 91.8
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.5e-40 169.1 90 90.0
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.5e-40 169.1 85 91.8
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 2.0e-40 168.7 80 97.5
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-40 168.7 86 91.9
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.6e-40 168.3 89 89.9
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.6e-40 168.3 82 95.1
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.5e-40 167.9 85 90.6
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 4.5e-40 167.5 85 90.6
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.5e-40 167.5 85 89.4
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 91.0
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 4.5e-40 167.5 80 95.0
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 4.5e-40 167.5 82 93.9
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 88.8
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 5.9e-40 167.2 85 90.6
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 5.9e-40 167.2 85 89.4
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 7.7e-40 166.8 80 95.0
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 7.7e-40 166.8 82 92.7
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 1.0e-39 166.4 86 91.9
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.0e-39 166.4 89 88.8
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 1.3e-39 166.0 89 87.6
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.2e-39 165.2 97 83.5
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.9e-39 164.9 89 86.5
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 2.9e-39 164.9 84 92.9
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 3.8e-39 164.5 83 90.4
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.8e-39 164.5 95 86.3
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 5.0e-39 164.1 89 86.5
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 5.0e-39 164.1 82 92.7
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 5.0e-39 164.1 87 88.5
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 5.0e-39 164.1 90 86.7
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 6.5e-39 163.7 88 88.6
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 6.5e-39 163.7 82 92.7
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.9e-38 162.2 82 87.8
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 2.5e-38 161.8 85 88.2
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 2.5e-38 161.8 99 80.8
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 4.2e-38 161.0 75 97.3
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 9.4e-38 159.8 80 90.0
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 1.2e-37 159.5 77 92.2
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.2e-37 159.5 78 92.3
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.6e-37 159.1 80 88.8
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.6e-37 159.1 80 88.8
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.6e-37 159.1 81 91.4
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.6e-37 159.1 78 93.6
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 2.7e-37 158.3 76 94.7
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 3.6e-37 157.9 84 84.5
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 8.0e-37 156.8 76 90.8
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 1.8e-36 155.6 75 94.7
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.3e-36 155.2 78 91.0
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.3e-36 155.2 78 91.0
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.0e-36 154.8 83 83.1
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 5.2e-36 154.1 89 79.8
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 2.0e-35 152.1 83 88.0
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 2.6e-35 151.8 74 90.5
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 2.6e-35 151.8 80 86.2
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 7.4e-35 150.2 77 89.6
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 2.8e-34 148.3 82 80.5
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 3.7e-34 147.9 74 87.8
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 3.7e-34 147.9 74 87.8
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 3.7e-34 147.9 74 87.8
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 3.7e-34 147.9 74 87.8
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 2.6e-32 141.7 75 82.7
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 7.7e-32 140.2 70 87.1
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.2e-31 138.7 85 81.2
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 3.2e-30 134.8 70 90.0
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 4.2e-30 134.4 68 86.8
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.7e-29 131.7 91 69.2
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 6.1e-29 130.6 69 81.2
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 4.0e-28 127.9 64 90.6
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 7.5e-27 123.6 65 87.7
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 4.8e-26 120.9 60 88.3
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 7.7e-24 113.6 63 81.0
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 4.7e-21 104.4 55 89.1
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.0e-20 103.2 48 97.9
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 1.4e-20 102.8 77 61.0
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 1.4e-17 92.8 54 81.5
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 9.1e-17 90.1 44 90.9
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.6e-16 89.4 52 80.8
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 5.0e-15 84.3 88 52.3
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 6.6e-15 84.0 46 82.6
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.5e-14 80.9 38 92.1
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.2e-13 79.7 67 62.7
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.6e-13 79.3 37 97.3
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 2.8e-13 78.6 47 80.9
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 6.1e-13 77.4 53 71.7
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 8.0e-13 77.0 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 8.0e-13 77.0 39 82.1
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.0e-12 76.6 59 64.4
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 3.4e-11 71.6 38 89.5
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.2e-10 68.9 38 84.2
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.1e-09 66.6 51 58.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.2e-09 63.5 29 89.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.5e-08 61.2 38 81.6
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.5e-06 55.5 29 82.8


User provided reference genes

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