Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 5.0e-166 587.8 316 100.0
Solyc11g064930.3 Solanum lycopersicum HOM05D012161 ORTHO05D002431 1.2e-111 407.1 239 94.6
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.5e-101 372.9 311 64.3
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 1.2e-82 310.8 342 52.9
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 5.8e-74 282.0 176 78.4
Peaxi162Scf00004g00434 Petunia axillaris HOM05D012161 ORTHO05D002431 4.3e-53 212.6 246 52.0
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 2.1e-15 87.4 106 45.3
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 2.3e-14 84.0 77 50.6
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 3.0e-14 83.6 74 48.6
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 6.8e-14 82.4 77 50.6
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 8.8e-14 82.0 76 50.0
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 1.2e-13 81.6 81 48.1
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 1.5e-13 81.3 77 51.9
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 1.5e-13 81.3 167 37.1
Peaxi162Scf00272g00824 Petunia axillaris HOM05D023424 ORTHO05D002431 2.0e-13 80.9 155 38.7
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 4.4e-13 79.7 73 52.1
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 9.8e-13 78.6 84 45.2
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 9.8e-13 78.6 85 45.9
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 1.3e-12 78.2 86 46.5
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.7e-12 77.8 81 48.1
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.7e-12 77.8 81 48.1
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 1.7e-12 77.8 81 48.1
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 2.8e-12 77.0 84 46.4
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 1.1e-11 75.1 79 50.6
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 1.1e-11 75.1 88 44.3
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 2.4e-11 73.9 80 46.2
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 3.1e-11 73.6 84 47.6
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 3.1e-11 73.6 88 43.2
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 3.1e-11 73.6 109 36.7
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 9.1e-11 72.0 83 42.2
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 9.1e-11 72.0 78 47.4
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 1.6e-10 71.2 91 44.0
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 2.7e-10 70.5 87 42.5
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 2.7e-10 70.5 57 52.6
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 3.5e-10 70.1 89 43.8
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 5.9e-10 69.3 75 44.0
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 5.9e-10 69.3 87 41.4
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 1.3e-09 68.2 83 43.4
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 1.3e-09 68.2 54 59.3
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 1.7e-09 67.8 80 43.8
Solyc12g099780.2 Solanum lycopersicum HOM05D023424 ORTHO05D002431 2.9e-09 67.0 91 44.0
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 3.8e-09 66.6 90 42.2
PGSC0003DMG400004715 Solanum tuberosum HOM05D023424 ORTHO05D002431 5.0e-09 66.2 91 44.0
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 6.6e-09 65.9 82 42.7
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.9e-08 64.3 52 57.7
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 1.9e-08 64.3 52 57.7
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 1.9e-08 64.3 52 57.7
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.9e-08 64.3 52 57.7
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 3.3e-08 63.5 76 46.1
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 4.2e-08 63.2 59 52.5
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 4.2e-08 63.2 357 26.1
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 5.6e-08 62.8 38 71.1
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 7.2e-08 62.4 53 54.7
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 2.8e-07 60.5 88 37.5
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 2.8e-07 60.5 88 37.5
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 2.8e-07 60.5 61 50.8
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 2.8e-07 60.5 61 50.8
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 2.8e-07 60.5 58 53.4
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 3.6e-07 60.1 89 37.1
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 3.6e-07 60.1 88 37.5
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 3.6e-07 60.1 89 37.1
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 3.6e-07 60.1 89 37.1
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.6e-07 60.1 87 34.5
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 3.6e-07 60.1 38 71.1
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 4.7e-07 59.7 62 51.6
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 4.7e-07 59.7 37 73.0
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 4.7e-07 59.7 51 62.7
TPR.G24378 Trifolium pratense HOM05D012161 ORTHO05D002431 6.1e-07 59.3 186 32.8
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 1.0e-06 58.5 37 70.3
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 1.0e-06 58.5 37 70.3
SGA_v2.0_scaffold310G48220 Striga asiatica HOM05D014772 ORTHO05D019381 1.0e-06 58.5 57 57.9
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 1.4e-06 58.2 55 49.1
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 2.3e-06 57.4 99 32.3
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 3.0e-06 57.0 42 69.0
BcaB07g29762 Brassica carinata HOM05D002917 ORTHO05D002431 4.0e-06 56.6 46 60.9
Migut.N02378 Erythranthe guttata HOM05D009394 ORTHO05D002431 4.0e-06 56.6 61 41.0
Aa31LG1G17080 Aethionema arabicum HOM05D002917 ORTHO05D002431 5.2e-06 56.2 59 52.5
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 5.2e-06 56.2 351 25.1
BcaC03g18283 Brassica carinata HOM05D002917 ORTHO05D002431 6.8e-06 55.8 46 60.9
BcaC04g23276 Brassica carinata HOM05D002917 ORTHO05D002431 6.8e-06 55.8 47 59.6
A02p43530 Brassica napus HOM05D002917 ORTHO05D002431 6.8e-06 55.8 46 60.9
A09p08870 Brassica napus HOM05D002917 ORTHO05D002431 6.8e-06 55.8 47 59.6
C02p63620 Brassica napus HOM05D002917 ORTHO05D002431 6.8e-06 55.8 46 60.9
C09p10290 Brassica napus HOM05D002917 ORTHO05D002431 6.8e-06 55.8 47 59.6
BolC2t12428H Brassica oleracea HOM05D002917 ORTHO05D002431 6.8e-06 55.8 46 60.9
BolC9t53929H Brassica oleracea HOM05D002917 ORTHO05D002431 6.8e-06 55.8 47 59.6
BraA02t09281Z Brassica rapa HOM05D002917 ORTHO05D002431 6.8e-06 55.8 46 60.9
BraA09t36538Z Brassica rapa HOM05D002917 ORTHO05D002431 6.8e-06 55.8 47 59.6
ECA238G1147 Erigeron canadensis HOM05D002917 ORTHO05D002431 6.8e-06 55.8 93 33.3
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 6.8e-06 55.8 62 51.6
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 6.8e-06 55.8 62 51.6
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 6.8e-06 55.8 116 30.2
Sed0016172 Sechium edule HOM05D002917 ORTHO05D002431 6.8e-06 55.8 78 46.2
BcaB04g19997 Brassica carinata HOM05D002917 ORTHO05D002431 8.9e-06 55.5 47 59.6
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 8.9e-06 55.5 62 50.0


User provided reference genes

Program Settings