Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g023010 Solanum pennellii HOM05D003455 ORTHO05D004165 1.4e-41 172.6 86 100.0
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 8.0e-18 93.6 57 82.5
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 8.0e-18 93.6 57 82.5
Nitab4.5_0000212g0320 Nicotiana tabacum HOM05D003455 ORTHO05D004165 6.8e-17 90.5 57 78.9
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 5.7e-16 87.4 57 78.9
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 7.5e-16 87.0 57 70.2
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 3.7e-15 84.7 57 71.9
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 3.7e-15 84.7 57 71.9
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 4.8e-15 84.3 57 71.9
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 1.1e-14 83.2 57 66.7
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 1.1e-14 83.2 57 70.2
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 1.4e-14 82.8 57 70.2
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 1.4e-14 82.8 57 66.7
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.4e-14 82.8 57 66.7
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 1.4e-14 82.8 57 71.9
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 1.8e-14 82.4 57 66.7
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 1.8e-14 82.4 57 68.4
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 1.8e-14 82.4 57 68.4
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 2.4e-14 82.0 57 66.7
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 2.4e-14 82.0 57 66.7
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 2.4e-14 82.0 57 66.7
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.4e-14 82.0 57 66.7
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 2.4e-14 82.0 57 66.7
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.4e-14 82.0 57 70.2
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 3.1e-14 81.6 57 66.7
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 3.1e-14 81.6 57 66.7
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 3.1e-14 81.6 57 64.9
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 3.1e-14 81.6 70 57.1
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 4.1e-14 81.3 57 64.9
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 4.1e-14 81.3 57 64.9
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 4.1e-14 81.3 57 66.7
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 4.1e-14 81.3 57 66.7
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 5.4e-14 80.9 57 64.9
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 5.4e-14 80.9 57 66.7
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 5.4e-14 80.9 57 66.7
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 7.0e-14 80.5 57 64.9
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 7.0e-14 80.5 57 64.9
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 7.0e-14 80.5 57 66.7
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 1.2e-13 79.7 57 64.9
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 1.2e-13 79.7 57 66.7
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 1.2e-13 79.7 57 64.9
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 1.6e-13 79.3 57 64.9
ATR0827G178 Amborella trichopoda HOM05D003455 ORTHO05D004165 2.0e-13 79.0 57 63.2
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 2.0e-13 79.0 57 61.4
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 2.0e-13 79.0 63 55.6
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 2.0e-13 79.0 57 63.2
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 2.0e-13 79.0 57 63.2
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 2.0e-13 79.0 57 63.2
TAR622G0123 Trochodendron aralioides HOM05D003455 ORTHO05D004165 2.0e-13 79.0 57 63.2
ATR0794G008 Amborella trichopoda HOM05D003455 ORTHO05D004165 2.7e-13 78.6 57 61.4
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 2.7e-13 78.6 57 63.2
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 2.7e-13 78.6 57 63.2
Haze_14415 Corylus avellana HOM05D003455 ORTHO05D004165 2.7e-13 78.6 63 58.7
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 2.7e-13 78.6 57 66.7
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 2.7e-13 78.6 57 64.9
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 2.7e-13 78.6 61 60.7
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 2.7e-13 78.6 61 60.7
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 2.7e-13 78.6 57 64.9
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 2.7e-13 78.6 57 63.2
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 3.5e-13 78.2 57 64.9
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 3.5e-13 78.2 57 61.4
arahy.Tifrunner.gnm1.ann1.S4R36H Arachis hypogaea HOM05D003455 ORTHO05D004165 3.5e-13 78.2 61 60.7
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 3.5e-13 78.2 57 63.2
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 3.5e-13 78.2 61 60.7
vmacro18140 Vaccinium macrocarpon HOM05D003455 ORTHO05D004165 3.5e-13 78.2 57 63.2
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 4.5e-13 77.8 57 63.2
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 5.9e-13 77.4 57 66.7
Sabra04G0070200 Salix brachista HOM05D003455 ORTHO05D004165 5.9e-13 77.4 57 59.6
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 5.9e-13 77.4 57 61.4
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 5.9e-13 77.4 57 61.4
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 5.9e-13 77.4 57 63.2
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 7.7e-13 77.0 57 61.4
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 7.7e-13 77.0 57 64.9
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 7.7e-13 77.0 57 59.6
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.0e-12 76.6 57 61.4
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 1.0e-12 76.6 57 63.2
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 1.0e-12 76.6 57 59.6
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 1.0e-12 76.6 56 64.3
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 1.0e-12 76.6 57 59.6
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.3e-12 76.3 57 59.6
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.3e-12 76.3 57 61.4
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.3e-12 76.3 57 61.4
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 1.7e-12 75.9 65 58.5
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 1.7e-12 75.9 65 58.5
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.7e-12 75.9 57 61.4
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 1.7e-12 75.9 57 61.4
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 1.7e-12 75.9 57 59.6
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 1.7e-12 75.9 57 59.6
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 1.7e-12 75.9 57 59.6
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 59.6
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 63.2
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 61.4
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 2.3e-12 75.5 61 57.4
Lalb_Chr21g0318331 Lupinus albus HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 61.4
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 63.2
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 2.3e-12 75.5 61 57.4
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 64.9
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 61.4
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 2.3e-12 75.5 57 59.6
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 2.9e-12 75.1 57 61.4
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 2.9e-12 75.1 61 59.0
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 2.9e-12 75.1 57 61.4
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 2.9e-12 75.1 57 61.4
MELO3C022038.2 Cucumis melo HOM05D003455 ORTHO05D004165 2.9e-12 75.1 57 59.6
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 2.9e-12 75.1 57 59.6
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 2.9e-12 75.1 57 59.6
RcHm_v2.0_Chr2g0165441 Rosa chinensis HOM05D003455 ORTHO05D004165 2.9e-12 75.1 69 56.5
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 2.9e-12 75.1 57 61.4
BcaC01g04456 Brassica carinata HOM05D003455 ORTHO05D004165 3.8e-12 74.7 57 61.4
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 3.8e-12 74.7 57 61.4
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 3.8e-12 74.7 57 61.4
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 3.8e-12 74.7 57 61.4
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 3.8e-12 74.7 57 57.9
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 3.8e-12 74.7 57 61.4
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 3.8e-12 74.7 57 63.2
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 5.0e-12 74.3 57 61.4
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 5.0e-12 74.3 57 61.4
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 5.0e-12 74.3 57 61.4
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 5.0e-12 74.3 57 61.4
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 5.0e-12 74.3 61 55.7
AT3G02200 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 6.6e-12 73.9 57 59.6
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 6.6e-12 73.9 57 59.6
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 8.6e-12 73.6 61 59.0
Actinidia04538 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.1e-11 73.2 57 57.9
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 1.1e-11 73.2 61 55.7
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 1.1e-11 73.2 61 57.4
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 1.5e-11 72.8 57 61.4
Aa31LG5G12730 Aethionema arabicum HOM05D003455 ORTHO05D004165 1.5e-11 72.8 57 57.9
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 1.5e-11 72.8 57 59.6
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 1.5e-11 72.8 57 61.4
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 1.9e-11 72.4 57 57.9
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 2.5e-11 72.0 57 59.6
A03p07220 Brassica napus HOM05D003455 ORTHO05D004165 2.5e-11 72.0 63 54.0
C03p08220 Brassica napus HOM05D003455 ORTHO05D004165 2.5e-11 72.0 57 59.6
BraA03t10044Z Brassica rapa HOM05D003455 ORTHO05D004165 2.5e-11 72.0 63 54.0
CDE09G1009 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 3.3e-11 71.6 56 57.1
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 3.3e-11 71.6 57 57.9
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 3.3e-11 71.6 57 57.9
Os04g0103200 Oryza sativa ssp. japonica HOM05D003455 ORTHO05D004165 4.2e-11 71.2 57 61.4
BolC1t05918H Brassica oleracea HOM05D003455 ORTHO05D002350 5.5e-11 70.9 57 59.6
BolC3t13319H Brassica oleracea HOM05D003455 ORTHO05D004165 5.5e-11 70.9 55 60.0
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 5.5e-11 70.9 61 54.1
MD17G1062900 Malus domestica HOM05D003455 ORTHO05D004165 5.5e-11 70.9 65 53.8
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 5.5e-11 70.9 57 61.4
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 9.5e-11 70.1 58 60.3
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 9.5e-11 70.1 58 60.3
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 9.5e-11 70.1 58 60.3
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 9.5e-11 70.1 58 60.3
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 1.2e-10 69.7 57 56.1
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 6.1e-10 67.4 57 57.9
MELO3C001165.2 Cucumis melo HOM05D003455 ORTHO05D004165 6.1e-10 67.4 69 47.8
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 8.0e-10 67.0 57 54.4
BcaC09g47686 Brassica carinata HOM05D003455 ORTHO05D002350 1.0e-09 66.6 65 47.7
BNapus_Darmor_BZH_scaffold_113p00190 Brassica napus HOM05D003455 ORTHO05D002350 1.0e-09 66.6 57 56.1
BraA01t04626Z Brassica rapa HOM05D003455 ORTHO05D002350 1.4e-09 66.2 65 49.2
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 1.4e-09 66.2 83 44.6
MELO3C000027.2 Cucumis melo HOM05D003455 ORTHO05D004165 1.8e-09 65.9 63 52.4
SEGI_08931 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 6.8e-09 63.9 56 53.6
AagrBONN_evm.TU.Sc2ySwM_117.3585 Anthoceros agrestis HOM05D003455 ORTHO05D004165 1.2e-08 63.2 57 52.6
Pp3c14_18640 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.2e-08 63.2 57 52.6
Pp3c14_18645 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.2e-08 63.2 57 52.6
SEGI_28709 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 1.5e-08 62.8 56 51.8
Mapoly0097s0065 Marchantia polymorpha HOM05D003455 ORTHO05D004165 2.0e-08 62.4 57 50.9
PGSC0003DMG400040047 Solanum tuberosum HOM05D003455 ORTHO05D004165 4.4e-08 61.2 38 78.9
PGSC0003DMG400041699 Solanum tuberosum HOM05D003455 ORTHO05D004165 4.4e-08 61.2 45 68.9
Pp3c17_21330 Physcomitrium patens HOM05D003455 ORTHO05D004165 7.5e-08 60.5 57 50.9
CBR_g38096 Chara braunii HOM05D003455 ORTHO05D004165 9.8e-08 60.1 58 53.4
PGSC0003DMG400037406 Solanum tuberosum HOM05D003455 ORTHO05D004165 3.7e-07 58.2 38 76.3
SMO174G0231 Selaginella moellendorffii HOM05D003455 ORTHO05D004165 4.9e-07 57.8 64 43.8


User provided reference genes

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