Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g021670 Solanum pennellii HOM05D001560 ORTHO05D003613 5.6e-62 240.7 120 100.0
Solyc00g230060.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 2.9e-18 95.5 63 74.6
CAN.G745.35 Capsicum annuum HOM05D001560 ORTHO05D003613 2.3e-15 85.9 54 77.8
Sopen11g018210 Solanum pennellii HOM05D001560 ORTHO05D003613 4.0e-15 85.1 54 77.8
CAN.G1180.6 Capsicum annuum HOM05D001560 ORTHO05D003613 8.8e-15 84.0 54 75.9
Peaxi162Scf00622g00016 Petunia axillaris HOM05D001560 ORTHO05D003613 2.6e-14 82.4 54 74.1
Solyc09g056070.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 1.3e-13 80.1 64 62.5
DCAR_032442 Daucus carota HOM05D001560 ORTHO05D003613 1.7e-13 79.7 54 72.2
Dinv06700 Davidia involucrata HOM05D001560 ORTHO05D003613 1.7e-13 79.7 54 72.2
Lsat_1_v5_gn_5_16600 Lactuca sativa HOM05D001560 ORTHO05D003613 1.7e-13 79.7 54 68.5
Lj2C1229T3 Lonicera japonica HOM05D001560 ORTHO05D003613 1.7e-13 79.7 63 63.5
Nitab4.5_0001152g0950 Nicotiana tabacum HOM05D001560 ORTHO05D003613 1.7e-13 79.7 52 73.1
CAN.G1321.15 Capsicum annuum HOM05D001560 ORTHO05D003613 2.2e-13 79.3 52 75.0
HanXRQChr08g0236181 Helianthus annuus HOM05D001560 ORTHO05D003613 2.2e-13 79.3 54 72.2
HanXRQChr13g0415511 Helianthus annuus HOM05D001560 ORTHO05D003613 2.8e-13 79.0 54 70.4
HanXRQMTg0579631 Helianthus annuus HOM05D001560 ORTHO05D003613 2.8e-13 79.0 54 70.4
Lsat_1_v5_gn_3_89520 Lactuca sativa HOM05D001560 ORTHO05D003613 3.7e-13 78.6 54 70.4
Nn1g09975 Nelumbo nucifera HOM05D001560 ORTHO05D003613 3.7e-13 78.6 90 52.2
Nn1g10043 Nelumbo nucifera HOM05D001560 ORTHO05D003613 3.7e-13 78.6 90 52.2
Nn4g26006 Nelumbo nucifera HOM05D001560 ORTHO05D003613 3.7e-13 78.6 90 52.2
Nn4g26010 Nelumbo nucifera HOM05D001560 ORTHO05D003613 3.7e-13 78.6 90 52.2
Peaxi162Scf00348g00514 Petunia axillaris HOM05D001560 ORTHO05D003613 6.3e-13 77.8 54 72.2
Actinidia34853 Actinidia chinensis HOM05D001560 ORTHO05D003613 1.4e-12 76.6 54 70.4
HanXRQChr01g0012841 Helianthus annuus HOM05D001560 ORTHO05D003613 1.4e-12 76.6 54 68.5
Hma1.2p1_0261F.1_g105120 Hydrangea macrophylla HOM05D001560 ORTHO05D003613 1.4e-12 76.6 54 68.5
PSO675G8388 Papaver somniferum HOM05D001560 ORTHO05D003613 1.8e-12 76.3 52 69.2
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 1.8e-12 76.3 54 68.5
Cpa.g.sc89.22 Carica papaya HOM05D001560 ORTHO05D003613 2.4e-12 75.9 54 70.4
TWI75G1342 Tripterygium wilfordii HOM05D001560 ORTHO05D003613 3.1e-12 75.5 52 71.2
ClCG10G004690 Citrullus lanatus HOM05D001560 ORTHO05D003613 5.4e-12 74.7 52 71.2
Sed0003843 Sechium edule HOM05D001560 ORTHO05D003613 5.4e-12 74.7 52 71.2
Sed0013276 Sechium edule HOM05D001560 ORTHO05D003613 5.4e-12 74.7 52 71.2
PGR028G0023 Punica granatum HOM05D001560 ORTHO05D003613 7.0e-12 74.3 54 68.5
PGR071G0003 Punica granatum HOM05D001560 ORTHO05D003613 7.0e-12 74.3 54 68.5
RhsimMtG0005500 Rhododendron simsii HOM05D001560 ORTHO05D003613 9.1e-12 73.9 54 68.5
unitig_87.g27957 Utricularia gibba HOM05D001560 ORTHO05D003613 9.1e-12 73.9 56 69.6
Gorai.005G104100 Gossypium raimondii HOM05D001560 ORTHO05D003613 1.2e-11 73.6 52 71.2
HanXRQChr09g0251121 Helianthus annuus HOM05D001560 ORTHO05D003613 1.2e-11 73.6 54 64.8
CANSAT16G0039 Cannabis sativa HOM05D001560 ORTHO05D003613 1.6e-11 73.2 52 69.2
ClCG06G008570 Citrullus lanatus HOM05D001560 ORTHO05D003613 2.7e-11 72.4 52 69.2
Potri.007G062302 Populus trichocarpa HOM05D001560 ORTHO05D003613 3.5e-11 72.0 52 67.3
SabraMtG0009600 Salix brachista HOM05D001560 ORTHO05D003613 3.5e-11 72.0 52 67.3
AL3G44410 Arabidopsis lyrata HOM05D001560 ORTHO05D003613 4.5e-11 71.6 75 53.3
ATMG00520 Arabidopsis thaliana HOM05D001560 ORTHO05D003613 7.7e-11 70.9 52 67.3
CARHR282880 Cardamine hirsuta HOM05D001560 ORTHO05D003613 7.7e-11 70.9 52 67.3
CARHR287190 Cardamine hirsuta HOM05D001560 ORTHO05D003613 7.7e-11 70.9 52 67.3
COL.COLO4_04089 Corchorus olitorius HOM05D001560 ORTHO05D003613 7.7e-11 70.9 54 66.7
Ca_14833_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.3e-10 70.1 52 67.3
Ca_22165_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.3e-10 70.1 52 67.3
LjContig00315g0001212 Lotus japonicus HOM05D001560 ORTHO05D003613 1.3e-10 70.1 52 67.3
Nitab4.5_0000307g0350 Nicotiana tabacum HOM05D001560 ORTHO05D003613 1.3e-10 70.1 54 64.8
AUR62042345 Chenopodium quinoa HOM05D001560 ORTHO05D003613 1.7e-10 69.7 54 64.8
TPR.G162 Trifolium pratense HOM05D001560 ORTHO05D003613 3.8e-10 68.6 52 65.4
arahy.Tifrunner.gnm1.ann1.7G246T Arachis hypogaea HOM05D001560 ORTHO05D003613 5.0e-10 68.2 52 65.4
arahy.Tifrunner.gnm1.ann1.JTWL6Q Arachis hypogaea HOM05D001560 ORTHO05D003613 5.0e-10 68.2 52 65.4
Ah.10g028460 Amaranthus hybridus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 50 64.0
ATR0693G347 Amborella trichopoda HOM05D001560 ORTHO05D003613 6.6e-10 67.8 75 50.7
CsaV3_UNG210420 Cucumis sativus L. HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 63.0
Hund12883 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund12886 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund27586 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund27816 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund27900 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund28069 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund28082 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund28866 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund28883 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund29084 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
Hund29205 Selenicereus undatus HOM05D001560 ORTHO05D003613 6.6e-10 67.8 54 61.1
ClCG10G004710 Citrullus lanatus HOM05D001560 ORTHO05D003613 8.6e-10 67.4 47 70.2
CAN.G497.19 Capsicum annuum HOM05D001560 ORTHO05D003613 1.1e-09 67.0 42 73.8
Lalb_Chr00c21g0406061 Lupinus albus HOM05D001560 ORTHO05D003613 1.1e-09 67.0 52 65.4
Lalb_Chr00c39g0409051 Lupinus albus HOM05D001560 ORTHO05D003613 1.1e-09 67.0 52 65.4
Lalb_Chr00c39g0409231 Lupinus albus HOM05D001560 ORTHO05D003613 1.1e-09 67.0 52 65.4
Lalb_Chr00c51g0413141 Lupinus albus HOM05D001560 ORTHO05D003613 1.1e-09 67.0 52 65.4
Sc04g0005570 Simmondsia chinensis HOM05D001560 ORTHO05D003613 1.1e-09 67.0 54 63.0
AUR62038665 Chenopodium quinoa HOM05D001560 ORTHO05D003613 1.9e-09 66.2 49 67.3
BolSC28t60329H Brassica oleracea HOM05D001560 ORTHO05D003613 2.5e-09 65.9 53 66.0
BraSC48t46281Z Brassica rapa HOM05D001560 ORTHO05D003613 2.5e-09 65.9 53 66.0
BraSC77t46661Z Brassica rapa HOM05D001560 ORTHO05D003613 2.5e-09 65.9 53 66.0
Sp3g25920 Schrenkiella parvula HOM05D001560 ORTHO05D003613 2.5e-09 65.9 53 66.0
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 4.2e-09 65.1 52 63.5
Nitab4.5_0000886g0180 Nicotiana tabacum HOM05D001560 ORTHO05D003613 7.2e-09 64.3 54 61.1
SHI45575 Sapria himalayana HOM05D001560 ORTHO05D003613 9.5e-09 63.9 52 63.5
SHI46061 Sapria himalayana HOM05D001560 ORTHO05D003613 2.1e-08 62.8 61 54.1
C01p34990 Brassica napus HOM05D001560 ORTHO05D003613 2.8e-08 62.4 50 64.0
SHI38843 Sapria himalayana HOM05D001560 ORTHO05D003613 2.8e-08 62.4 51 62.7
SHI49510 Sapria himalayana HOM05D001560 ORTHO05D003613 2.8e-08 62.4 52 61.5
SHI36270 Sapria himalayana HOM05D001560 ORTHO05D003613 3.6e-08 62.0 49 63.3
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-08 62.0 51 62.7
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 8.0e-08 60.8 52 61.5
SHI38463 Sapria himalayana HOM05D001560 ORTHO05D003613 8.0e-08 60.8 52 61.5
SHI27345 Sapria himalayana HOM05D001560 ORTHO05D003613 1.4e-07 60.1 47 66.0
SHI34636 Sapria himalayana HOM05D001560 ORTHO05D003613 1.4e-07 60.1 52 59.6
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 1.4e-07 60.1 51 58.8
SHI37900 Sapria himalayana HOM05D001560 ORTHO05D003613 1.4e-07 60.1 52 59.6
SHI35000 Sapria himalayana HOM05D001560 ORTHO05D003613 3.0e-07 58.9 52 57.7
SHI36584 Sapria himalayana HOM05D001560 ORTHO05D003613 4.0e-07 58.5 52 57.7
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 4.0e-07 58.5 50 60.0
SHI38561 Sapria himalayana HOM05D001560 ORTHO05D003613 8.9e-07 57.4 53 58.5
SHI38584 Sapria himalayana HOM05D001560 ORTHO05D003613 8.9e-07 57.4 53 58.5
SHI37855 Sapria himalayana HOM05D001560 ORTHO05D003613 1.5e-06 56.6 52 57.7
CDE02G0303 Ceratophyllum demersum HOM05D001560 ORTHO05D003613 2.0e-06 56.2 58 56.9
SHI37382 Sapria himalayana HOM05D001560 ORTHO05D003613 2.0e-06 56.2 52 55.8
arahy.Tifrunner.gnm1.ann1.K9CWE8 Arachis hypogaea HOM05D001560 ORTHO05D003613 3.4e-06 55.5 47 61.7
Solyc11g030890.3 Solanum lycopersicum HOM05D001560 ORTHO05D003613 3.4e-06 55.5 54 57.4
Solyc10g049750.3 Solanum lycopersicum HOM05D000515 ORTHO05D003530 4.4e-06 55.1 98 35.7
SHI34996 Sapria himalayana HOM05D001560 ORTHO05D003613 5.7e-06 54.7 52 55.8
SHI38532 Sapria himalayana HOM05D001560 ORTHO05D003613 7.5e-06 54.3 52 57.7


User provided reference genes

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