Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 6.4e-290 1000.0 483 100.0
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 5.0e-250 867.5 488 87.5
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 5.0e-234 814.3 450 87.1
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.5e-182 643.3 470 66.6
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 3.2e-180 635.6 475 63.6
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 7.8e-179 630.9 461 65.3
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.0e-178 630.6 475 63.4
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.2e-176 623.6 474 63.7
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 5.2e-175 618.2 493 63.1
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 1.4e-172 610.1 478 61.3
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 5.6e-169 598.2 469 60.1
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 3.6e-168 595.5 472 60.4
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 2.2e-165 586.3 469 62.9
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 4.9e-165 585.1 474 58.0
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 6.4e-165 584.7 460 61.5
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 2.4e-164 582.8 473 61.3
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 4.2e-164 582.0 475 60.0
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 2.7e-163 579.3 481 60.1
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 5.6e-161 571.6 474 59.5
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 1.6e-160 570.1 511 56.2
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 2.4e-159 566.2 283 96.5
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 4.0e-159 565.5 481 58.0
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 2.6e-158 562.8 477 58.9
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 5.8e-158 561.6 505 56.0
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 1.7e-157 560.1 475 57.7
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.1e-156 557.4 475 57.5
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 1.6e-155 553.5 473 58.1
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 2.1e-155 553.1 473 58.6
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 2.1e-155 553.1 475 58.1
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 2.1e-155 553.1 472 55.9
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.5e-155 552.4 475 58.1
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.3e-154 549.7 475 56.8
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 2.3e-154 549.7 473 58.6
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 8.7e-154 547.7 475 56.8
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 9.6e-153 544.3 378 69.8
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 2.8e-152 542.7 471 56.9
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.1e-151 540.8 488 55.5
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 1.4e-151 540.4 473 56.9
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.8e-151 540.0 473 56.9
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 4.6e-147 525.4 467 57.8
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 1.0e-146 524.2 485 53.0
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 2.3e-146 523.1 485 55.7
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 3.0e-146 522.7 475 55.8
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.1e-145 520.8 463 56.8
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 1.5e-145 520.4 473 54.3
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 1.9e-145 520.0 518 51.5
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 2.5e-145 519.6 479 55.3
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 9.6e-145 517.7 286 88.8
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.0e-141 507.7 505 52.3
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 6.5e-141 505.0 475 55.6
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 4.2e-140 502.3 522 49.8
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 7.9e-139 498.0 487 50.7
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 8.7e-138 494.6 475 55.2
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.1e-137 494.2 479 55.3
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.5e-137 493.8 517 51.8
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.5e-137 493.0 385 60.8
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 5.7e-137 491.9 389 63.2
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 9.7e-137 491.1 472 50.8
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 2.6e-134 483.0 562 46.3
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 2.9e-133 479.6 479 50.3
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 3.0e-130 469.5 472 48.1
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 3.9e-130 469.2 474 50.6
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 1.5e-129 467.2 470 48.9
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 4.3e-129 465.7 471 47.8
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 7.4e-129 464.9 468 48.9
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 3.7e-128 462.6 478 49.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.5e-126 457.2 477 47.2
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 2.0e-126 456.8 473 48.0
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 3.4e-126 456.1 478 49.0
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.5e-126 455.7 449 53.2
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.0e-125 454.5 471 51.0
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 1.3e-125 454.1 341 63.0
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 1.1e-124 451.1 390 57.4
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 1.9e-124 450.3 471 46.9
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 7.2e-124 448.4 479 46.8
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 4.7e-123 445.7 512 44.5
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 5.7e-121 438.7 479 48.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.7e-120 437.2 473 46.1
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 2.8e-120 436.4 478 47.7
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 3.7e-120 436.0 511 47.4
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 3.1e-119 433.0 518 43.6
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 3.5e-118 429.5 434 52.1
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.0e-114 417.9 389 55.0
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 2.3e-114 416.8 461 44.7
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.9e-114 416.0 465 48.0
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.1e-111 407.9 466 48.3
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 1.1e-108 397.9 462 45.5
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 4.7e-107 392.5 469 45.0
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.8e-106 390.6 333 56.8
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.1e-99 367.1 265 65.3
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 4.7e-99 365.9 455 43.1
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 4.4e-97 359.4 314 57.0
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 2.9e-93 346.7 185 89.7
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 1.6e-91 340.9 284 59.2
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.8e-87 327.4 296 56.8
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 8.6e-85 318.5 480 35.6
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 1.4e-79 301.2 289 50.2
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 5.6e-76 289.3 331 46.5
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 9.8e-73 278.5 206 64.6
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.1e-68 265.0 469 33.0
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 8.1e-67 258.8 154 82.5
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 5.1e-61 239.6 191 64.4
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 8.4e-56 222.2 234 51.7
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 1.1e-55 221.9 455 30.8
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.6e-54 218.0 157 61.1
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 1.7e-53 214.5 183 56.8
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 8.7e-53 212.2 164 59.1
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 6.4e-48 196.1 163 62.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-42 178.3 360 33.1
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 9.9e-41 172.2 132 65.2
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.2e-33 148.7 192 43.2
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 2.1e-22 111.3 74 74.3
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 8.7e-21 105.9 91 54.9
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.9e-20 104.8 81 60.5
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 4.8e-19 100.1 359 26.5
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 4.1e-18 97.1 76 61.8
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 7.9e-14 82.8 53 71.7
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 8.8e-13 79.3 159 33.3
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.8e-10 71.6 102 42.2
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 4.5e-09 67.0 81 43.2
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.6e-06 58.5 44 54.5
QL01p005881 Quercus lobata HOM05D006389 ORTHO05D007863 4.7e-06 57.0 79 40.5


User provided reference genes

Program Settings