Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 0.0e+00 1206.8 611 100.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 0.0e+00 1198.7 611 99.3
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 0.0e+00 1179.5 611 97.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 0.0e+00 1085.1 611 88.1
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 0.0e+00 1081.6 611 88.9
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 0.0e+00 1078.9 612 88.1
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 7.1e-294 1013.4 606 84.8
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.2e-258 895.6 612 73.5
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 4.5e-256 887.9 612 72.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 7.2e-254 880.6 612 73.4
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.1e-253 879.0 613 72.9
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.5e-251 872.8 614 70.5
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 9.7e-251 870.2 613 71.3
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.7e-250 869.4 614 71.5
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 3.7e-250 868.2 595 73.6
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.1e-249 866.7 612 72.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 9.1e-249 863.6 610 72.1
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.4e-248 861.7 623 69.8
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.1e-246 856.7 613 70.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 6.1e-245 850.9 612 69.8
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 7.9e-245 850.5 616 69.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.0e-244 848.6 611 70.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 3.0e-244 848.6 617 69.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 5.1e-244 847.8 611 69.1
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 3.3e-243 845.1 617 70.0
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 4.4e-243 844.7 613 69.8
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 2.2e-242 842.4 617 69.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.8e-242 841.3 630 68.6
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.2e-242 840.5 616 69.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 8.2e-242 840.5 615 69.4
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-241 840.1 613 68.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.4e-241 839.7 614 68.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.1e-241 837.0 614 69.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 9.1e-241 837.0 614 69.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 9.1e-241 837.0 689 63.1
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.0e-240 835.9 624 68.8
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 2.6e-240 835.5 613 68.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.4e-240 835.1 617 68.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.4e-240 835.1 617 68.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.4e-240 835.1 614 68.9
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.2e-239 832.4 616 68.0
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.9e-239 832.0 614 68.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.9e-239 832.0 616 68.3
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 8.5e-239 830.5 617 69.7
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.4e-238 829.7 616 69.6
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 4.2e-238 828.2 612 69.6
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.5e-238 827.8 620 67.3
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.2e-237 826.6 616 68.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 3.6e-237 825.1 615 68.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.6e-237 825.1 612 67.5
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 6.1e-237 824.3 612 67.0
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.0e-236 823.5 612 68.6
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 6.7e-236 820.8 614 67.8
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.0e-235 819.3 614 67.4
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 6.3e-234 814.3 613 66.7
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 6.3e-234 814.3 613 66.6
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.8e-233 812.8 612 67.3
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.8e-233 812.8 613 66.4
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.4e-233 812.4 612 66.8
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 3.1e-233 812.0 613 66.7
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 3.1e-233 812.0 611 67.3
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 4.1e-233 811.6 613 66.4
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.7e-231 806.2 613 66.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 3.8e-231 805.1 618 67.0
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 5.0e-231 804.7 614 67.8
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 8.5e-231 803.9 618 67.0
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.9e-230 802.7 615 66.2
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.2e-230 802.0 613 65.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 3.2e-230 802.0 612 66.8
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.1e-229 799.3 613 65.4
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 8.0e-229 797.3 613 65.9
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.4e-228 796.6 608 66.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 3.0e-228 795.4 614 66.1
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.5e-227 793.1 604 66.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 5.0e-223 778.1 568 69.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.9e-222 776.2 569 68.4
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.2e-221 773.5 567 68.8
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.0e-220 770.4 611 65.0
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 8.8e-220 767.3 743 56.8
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.2e-218 762.7 614 64.7
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 3.1e-217 758.8 597 65.5
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.0e-216 756.1 618 62.6
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.7e-216 755.7 618 62.6
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 5.0e-215 751.5 547 68.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.1e-214 750.4 546 69.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 3.3e-214 748.8 579 67.0
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.5e-198 696.8 613 57.7
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 3.7e-194 682.2 613 60.4
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.6e-192 675.2 618 59.5
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 4.6e-192 675.2 615 56.9
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 6.4e-186 654.8 500 68.0
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.3e-175 620.5 685 52.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 6.9e-172 608.2 677 49.6
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.1e-168 596.7 526 61.0
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.9e-164 581.6 491 63.1
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.8e-156 557.0 511 57.1
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.8e-149 532.3 362 74.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.9e-146 523.1 387 67.4
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-138 496.9 384 65.9
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.1e-129 468.0 360 67.5
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 5.9e-123 445.7 232 98.3
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.4e-116 424.5 359 61.8
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 3.1e-116 423.3 321 67.0
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.1e-116 422.9 437 54.5
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 9.7e-110 401.7 655 39.2
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-108 396.7 387 56.1
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.6e-107 394.4 257 76.7
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.2e-104 384.8 257 74.3
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 9.8e-102 375.2 256 72.7
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.9e-97 360.9 244 70.9
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 3.7e-85 320.1 632 35.9
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 3.9e-74 283.5 179 74.9
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-60 237.3 222 57.7
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 6.2e-56 223.0 220 55.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.9e-53 214.2 169 67.5
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.8e-47 194.9 159 62.3
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 7.1e-44 183.0 110 80.9
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.1e-44 183.0 111 80.2
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-43 181.8 111 81.1
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-43 181.4 107 81.3
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-41 175.6 111 77.5
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-41 174.9 109 76.1
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 9.3e-36 156.0 104 68.3
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-35 154.5 134 63.4
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-32 144.8 100 72.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.3e-29 135.6 82 75.6
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-28 129.8 83 74.7
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-27 128.3 129 51.9
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 3.0e-26 124.4 97 59.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 3.0e-26 124.4 97 59.8
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 4.3e-25 120.6 519 26.0
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.1e-23 115.9 134 49.3
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-22 112.5 69 79.7
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-22 111.7 71 69.0
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-22 111.7 129 48.8
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-20 105.1 66 77.3
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-18 98.2 55 72.7
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.1e-17 95.9 88 52.3
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 7.4e-17 93.2 144 41.0
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 3.8e-13 80.9 55 67.3
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-11 73.6 41 80.5
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.8e-10 72.0 182 28.6
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.9e-10 70.9 50 68.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-10 70.9 40 77.5
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.0e-09 68.6 41 78.0
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.1e-07 62.8 45 73.3
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.4e-07 62.4 41 68.3
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-06 58.9 46 63.0
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 7.7e-06 56.6 51 51.0


User provided reference genes

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