Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500171.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.5e-87 326.2 172 100.0
Solyc00g500188.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.5e-87 326.2 172 100.0
Solyc00g500252.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.5e-87 326.2 172 100.0
Sopen11g018260 Solanum pennellii HOM05D003666 ORTHO05D004770 1.5e-87 326.2 172 100.0
Gorai.001G166300 Gossypium raimondii HOM05D003666 ORTHO05D004770 5.8e-84 314.3 172 97.1
FAN09G4889 Fragaria x ananassa HOM05D003666 ORTHO05D004770 2.9e-83 312.0 172 96.5
Lj2A1228G70 Lonicera japonica HOM05D003666 ORTHO05D004770 2.9e-83 312.0 172 97.1
RcHm_v2.0_MTg0498681 Rosa chinensis HOM05D003666 ORTHO05D004770 2.9e-83 312.0 172 96.5
Potri.007G061881 Populus trichocarpa HOM05D003666 ORTHO05D004770 1.4e-82 309.7 172 96.5
SabraMtG0002200 Salix brachista HOM05D003666 ORTHO05D004770 1.4e-82 309.7 172 96.5
SHI36046 Sapria himalayana HOM05D003666 ORTHO05D004770 2.4e-82 308.9 172 95.9
unitig_87.g28022 Utricularia gibba HOM05D003666 ORTHO05D004770 6.6e-80 300.8 159 98.1
Lj2A1223T77 Lonicera japonica HOM05D003666 ORTHO05D004770 5.6e-79 297.7 169 95.3
CiPaw.06G021600 Carya illinoinensis HOM05D003666 ORTHO05D004770 7.3e-79 297.4 172 91.3
Nn1g09957 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.1e-77 293.5 172 92.4
Nn1g09958 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.1e-77 293.5 172 92.4
Nn1g10168 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.1e-77 293.5 172 92.4
Nitab4.5_0000085g0130 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.7e-75 286.2 164 92.1
arahy.Tifrunner.gnm1.ann1.75QRLF Arachis hypogaea HOM05D003666 ORTHO05D004770 6.0e-73 277.7 167 89.8
arahy.Tifrunner.gnm1.ann1.ZBC6LT Arachis hypogaea HOM05D003666 ORTHO05D004770 6.0e-73 277.7 167 89.8
Lalb_Chr00c24g0407381 Lupinus albus HOM05D003666 ORTHO05D004770 6.0e-73 277.7 167 89.8
Lalb_Chr02g0154061 Lupinus albus HOM05D003666 ORTHO05D004770 3.0e-72 275.4 167 89.2
FAN09G2550 Fragaria x ananassa HOM05D003666 ORTHO05D004770 2.8e-70 268.9 155 91.6
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 1.5e-68 263.1 147 96.6
Aa31csc553G70 Aethionema arabicum HOM05D003666 ORTHO05D004770 5.8e-68 261.2 147 95.9
C04p19570 Brassica napus HOM05D003666 ORTHO05D004770 5.8e-68 261.2 159 90.6
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 5.8e-68 261.2 159 90.6
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 5.8e-68 261.2 159 90.6
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 5.8e-68 261.2 159 90.6
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 3.8e-67 258.5 143 97.2
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 2.4e-66 255.8 147 94.6
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 2.4e-66 255.8 147 94.6
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 1.2e-65 253.4 142 95.8
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 1.2e-65 253.4 142 96.5
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 2.7e-65 252.3 142 95.8
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 2.3e-64 249.2 142 95.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 6.6e-64 247.7 159 86.8
Medtr0082s0090 Medicago truncatula HOM05D003666 ORTHO05D004770 3.3e-63 245.4 143 92.3
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 7.3e-63 244.2 162 83.3
FAN09G4847 Fragaria x ananassa HOM05D003666 ORTHO05D004770 9.6e-63 243.8 148 91.9
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 4.7e-62 241.5 142 93.0
CDE02G3669 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 3.1e-61 238.8 138 94.2
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 9.0e-61 237.3 126 98.4
TAR626G0972 Trochodendron aralioides HOM05D003666 ORTHO05D004770 9.0e-61 237.3 157 86.0
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 5.8e-60 234.6 129 95.3
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 5.8e-60 234.6 129 95.3
CiPaw.15G113100 Carya illinoinensis HOM05D003666 ORTHO05D004770 7.1e-58 227.6 172 73.8
Ca_14829_v3 Cicer arietinum L. HOM05D003666 ORTHO05D004770 6.0e-57 224.6 129 90.7
Gohir.A08G104701 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.3e-54 216.9 126 90.5
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 6.2e-54 214.5 147 83.0
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.3e-53 211.5 146 82.9
SEGI_01871 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.2e-52 210.3 152 80.3
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 2.9e-43 179.1 96 96.9
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 8.4e-43 177.6 96 95.8
Lalb_Chr00c54g0413591 Lupinus albus HOM05D003666 ORTHO05D004770 3.3e-39 165.6 144 69.4
Dinv06696 Davidia involucrata HOM05D003666 ORTHO05D016272 4.8e-38 161.8 92 93.5
Nitab4.5_0000172g1340 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.9e-31 139.8 82 91.5
BcaC05g26876 Brassica carinata HOM05D003666 ORTHO05D004770 6.9e-29 131.3 77 90.9
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 9.0e-29 131.0 129 48.8
Nitab4.5_0000172g1330 Nicotiana tabacum HOM05D003666 ORTHO05D016272 1.3e-27 127.1 75 86.7
Migut.L00682 Erythranthe guttata HOM05D003666 ORTHO05D004770 3.8e-27 125.6 104 73.1
Pp3c2_30660 Physcomitrium patens HOM05D003666 ORTHO05D004770 3.6e-25 119.0 71 90.1
Solyc11g030570.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 3.9e-24 115.5 63 92.1
Gohir.A11G199666 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.1e-23 114.0 62 96.8
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 4.3e-23 112.1 173 48.0
Nitab4.5_0010687g0060 Nicotiana tabacum HOM05D003666 ORTHO05D036870 1.8e-21 106.7 55 96.4
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 3.4e-20 102.4 129 41.1
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-20 101.7 129 40.3
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-20 101.7 129 40.3
HanXRQChr08g0211971 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-20 101.7 129 40.3
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-20 101.7 129 40.3
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-20 101.7 129 40.3
GSVIVG01029664001 Vitis vinifera HOM05D003666 ORTHO05D004770 7.7e-20 101.3 54 92.6
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 1.0e-19 100.9 129 40.3
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.0e-19 100.9 129 40.3
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.3e-19 100.5 127 39.4
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.9e-19 99.4 113 44.2
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.9e-19 99.4 141 39.0
Ciclev10010880m.g Citrus clementina HOM05D001200 ORTHO05D002731 8.5e-19 97.8 129 38.8
Lalb_Chr23g0274791 Lupinus albus HOM05D001200 ORTHO05D002731 8.5e-19 97.8 113 44.2
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 1.4e-18 97.1 141 38.3
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 1.9e-18 96.7 113 43.4
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-18 96.7 113 44.2
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-18 96.7 113 44.2
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 2.5e-18 96.3 129 39.5
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 2.5e-18 96.3 129 39.5
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 2.5e-18 96.3 132 35.6
Peaxi162Scf01164g00035 Petunia axillaris HOM05D001200 ORTHO05D002731 4.2e-18 95.5 141 37.6
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 5.5e-18 95.1 146 39.0
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 7.2e-18 94.7 113 43.4
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 9.4e-18 94.4 141 38.3
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 9.4e-18 94.4 129 38.8
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 1.2e-17 94.0 141 38.3
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 1.2e-17 94.0 129 38.8
Pp3c6_27070 Physcomitrium patens HOM05D003666 ORTHO05D004770 2.7e-17 92.8 62 79.0
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 3.6e-17 92.4 141 38.3
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 3.6e-17 92.4 141 38.3
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 3.6e-17 92.4 141 38.3
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 4.7e-17 92.0 141 38.3
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 4.7e-17 92.0 141 38.3
BolSC46t60960H Brassica oleracea HOM05D001200 ORTHO05D002731 4.7e-17 92.0 141 38.3
BolSC29t60544H Brassica oleracea HOM05D001200 ORTHO05D002731 1.0e-16 90.9 114 43.0
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 1.8e-16 90.1 144 40.3
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 1.8e-16 90.1 129 37.2
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 3.0e-16 89.4 141 37.6
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 1.1e-15 87.4 101 44.6
Medtr7g075220 Medicago truncatula HOM05D000504 ORTHO05D002731 3.3e-15 85.9 113 39.8
Oeu053979.1 Olea europaea HOM05D001200 ORTHO05D002731 4.1e-13 79.0 101 37.6
Hma1.2p1_0402F.1_g145120 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 6.9e-13 78.2 51 86.3
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 3.4e-12 75.9 89 40.4
Solyc10g061990.3 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.3e-11 73.9 39 87.2
BolSC44t60820H Brassica oleracea HOM05D001200 ORTHO05D002731 3.8e-11 72.4 92 42.4
BolSC47t61066H Brassica oleracea HOM05D001200 ORTHO05D002731 3.8e-11 72.4 122 34.4
CsaV3_UNG210140 Cucumis sativus L. HOM05D001200 ORTHO05D002731 3.8e-11 72.4 105 35.2
Hund08793 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund12716 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund12843 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund23968 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund27631 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund27678 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund27755 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund27831 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28438 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28448 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28536 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28587 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28596 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28613 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28850 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28880 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28937 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28946 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28951 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28954 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28961 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28974 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund28979 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29026 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29089 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29109 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29179 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29186 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29244 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29247 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29251 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29254 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29261 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29273 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29277 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29281 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29285 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29288 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29316 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29434 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29438 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29453 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29499 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29654 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29713 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29755 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29814 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund29818 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund30036 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund30039 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund30120 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund30177 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund30365 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Hund30388 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-10 70.1 89 38.2
Nitab4.5_0001346g0060 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.5e-10 69.7 34 97.1
BolC2t08908H Brassica oleracea HOM05D001200 ORTHO05D002731 4.2e-10 68.9 122 34.4
Nitab4.5_0000172g0150 Nicotiana tabacum HOM05D016892 ORTHO05D016272 2.1e-09 66.6 41 82.9
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 8.0e-09 64.7 92 39.1
BolC2t10611H Brassica oleracea HOM05D001200 ORTHO05D002731 1.4e-08 63.9 76 44.7
Gorai.006G071400 Gossypium raimondii HOM05D001200 ORTHO05D002731 1.4e-08 63.9 87 36.8
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-08 63.9 93 32.3
Pp3c23_19840 Physcomitrium patens HOM05D003666 ORTHO05D004770 8.8e-08 61.2 37 75.7
RcHm_v2.0_CPg0502801 Rosa chinensis HOM05D001200 ORTHO05D002731 8.8e-08 61.2 76 43.4
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 1.5e-07 60.5 113 34.5
BraSC59t46528Z Brassica rapa HOM05D001200 ORTHO05D002731 2.0e-07 60.1 145 31.7
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 2.6e-07 59.7 55 56.4
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 3.3e-07 59.3 124 40.3
Lalb_Chr13g0292801 Lupinus albus HOM05D001200 ORTHO05D002731 5.7e-07 58.5 91 34.1
arahy.Tifrunner.gnm1.ann1.2QK9Z7 Arachis hypogaea HOM05D001200 ORTHO05D002731 1.3e-06 57.4 67 44.8
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 1.7e-06 57.0 67 43.3
Migut.D01384 Erythranthe guttata HOM05D001200 ORTHO05D002731 2.2e-06 56.6 86 34.9
TPR.G24771 Trifolium pratense HOM05D001200 ORTHO05D002731 4.8e-06 55.5 113 32.7


User provided reference genes

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