Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 3899.0 1986 100.0
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 3496.8 1825 97.6
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 3102.0 2192 75.0
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 2415.6 1991 66.4
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2279.6 2010 60.6
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2215.3 1996 58.3
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2127.8 2027 56.8
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 2118.6 2056 55.6
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2115.1 1996 55.1
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2040.8 1985 54.0
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2031.1 1987 54.7
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2030.8 2020 54.6
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2016.9 2067 52.9
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2016.9 2015 54.0
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2016.5 1986 53.6
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2015.4 1982 54.3
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2000.3 2015 53.9
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1993.4 1981 52.5
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1992.2 1991 53.6
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1990.3 1979 53.1
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1983.8 1983 53.6
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1979.5 1989 52.8
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1969.1 1986 53.1
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1961.4 1988 52.1
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1954.1 1983 52.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1939.1 1985 52.9
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1919.4 1986 52.0
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1913.3 1983 51.9
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1912.9 1987 51.6
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1909.0 1988 51.8
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1903.6 1987 51.6
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 1896.7 1217 80.9
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1885.5 2001 51.4
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1883.6 2085 49.5
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1861.3 1991 51.4
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1850.5 2007 49.5
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1848.2 1984 50.8
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1845.5 2007 49.5
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1845.1 2199 47.1
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1845.1 1978 50.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1835.8 1980 50.3
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1832.0 1979 50.6
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1831.2 1988 50.3
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1830.1 1988 49.8
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1815.8 2068 49.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1804.3 1974 49.7
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1801.9 1978 49.5
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1800.4 1987 50.1
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1799.3 1984 48.9
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1770.0 1978 49.0
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1768.1 2077 48.0
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1756.9 1791 52.6
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1756.5 1987 48.1
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1750.7 1982 49.4
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1745.7 2023 48.1
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1744.2 2107 46.5
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1743.4 1093 81.6
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1739.5 1995 47.9
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1734.2 1978 47.3
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1729.5 2028 47.5
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1726.8 1998 47.3
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1726.5 1980 47.6
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1719.1 1968 47.4
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1713.4 2037 47.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1713.4 1996 47.7
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1711.0 1981 47.5
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1699.5 1979 46.6
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1694.1 1954 47.3
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1679.1 1986 46.4
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1677.9 1989 46.3
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1675.2 1989 46.5
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1673.7 1986 46.5
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1668.7 1974 47.5
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1634.0 2024 45.0
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1563.1 1746 49.3
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1543.5 1981 44.3
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1541.6 2010 44.8
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1477.2 2023 43.1
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1417.1 2324 40.0
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1320.4 1411 52.8
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1276.2 1269 55.6
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1270.4 1399 50.0
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1258.8 793 81.6
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1219.1 2031 38.2
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1218.8 1509 46.7
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1133.2 1396 47.4
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.4e-285 987.6 1253 46.4
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 3.2e-263 913.3 2091 30.3
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 3.4e-260 903.3 2102 30.1
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.5e-255 887.9 728 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.5e-236 824.7 2102 28.2
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 2.8e-230 803.9 600 64.8
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 8.9e-221 772.3 713 57.1
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 4.3e-215 753.4 1026 42.3
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 6.8e-213 746.1 647 58.9
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.6e-196 689.5 1492 31.6
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.1e-181 642.5 1342 34.0
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.2e-180 639.0 865 41.6
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.9e-177 626.3 746 46.0
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 5.9e-172 610.1 475 63.4
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 4.1e-165 587.4 746 44.1
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 7.0e-157 560.1 715 41.5
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 8.0e-137 493.4 2218 23.7
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 9.8e-135 486.5 798 41.5
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.5e-124 451.4 540 47.8
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 4.9e-118 431.0 335 61.8
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 2.8e-113 415.2 499 44.7
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 6.6e-107 394.0 783 34.6
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 4.4e-103 381.3 608 39.0
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.7e-102 379.4 419 51.3
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.1e-97 360.5 745 33.8
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 3.8e-94 351.7 391 48.8
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.0e-91 343.6 664 35.8
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 2.4e-80 305.8 162 94.4
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.9e-76 290.8 193 69.9
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.5e-71 275.0 228 58.8
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.1e-69 270.4 646 31.1
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 3.1e-56 225.7 190 60.0
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.7e-49 203.4 479 27.3
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.4e-40 173.7 218 45.9
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.6e-36 160.2 330 34.5
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.6e-36 159.1 588 26.2
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.7e-36 158.7 138 58.0
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 4.0e-35 155.6 131 57.3
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.2e-34 154.1 138 56.5
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.8e-33 149.4 101 71.3
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.8e-33 148.7 409 30.1
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.8e-27 130.2 68 94.1
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 8.8e-27 127.9 107 62.6
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.5e-26 124.8 148 48.0
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.8e-25 122.9 92 59.8
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 9.1e-24 117.9 113 51.3
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 3.5e-23 115.9 523 22.9
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.1e-21 110.9 211 36.5
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.9e-21 110.2 88 55.7
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.0e-19 102.4 115 47.8
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.0e-19 102.4 288 28.1
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 8.9e-19 101.3 124 41.9
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.2e-18 100.9 215 30.2
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-17 96.7 126 40.5
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 8.3e-17 94.7 139 39.6
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.4e-16 94.0 112 44.6
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.8e-16 93.6 114 49.1
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.1e-16 92.8 92 50.0
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 2.0e-15 90.1 86 50.0
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 3.5e-15 89.4 68 63.2
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.2e-12 80.9 113 44.2
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 6.1e-12 78.6 80 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.4e-11 77.4 141 29.8
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 4.0e-11 75.9 106 36.8
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.2e-10 74.3 160 32.5
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 9.8e-10 71.2 52 57.7
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 2.9e-09 69.7 68 51.5
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 3.7e-09 69.3 56 57.1
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 3.2e-08 66.2 147 34.0
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 4.1e-08 65.9 69 46.4
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-07 64.3 121 36.4
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 2.7e-07 63.2 47 55.3
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 2.7e-07 63.2 150 29.3


User provided reference genes

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