Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 4.0e-185 651.4 344 100.0
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.0e-181 639.0 344 99.1
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 7.0e-174 614.0 343 95.6
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 1.6e-162 576.2 338 91.4
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 5.8e-160 567.8 343 88.9
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.9e-147 526.2 368 78.8
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.9e-139 499.6 278 93.9
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.3e-131 471.9 337 74.8
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 9.6e-131 470.7 335 75.8
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.8e-130 469.2 341 73.6
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 5.3e-129 464.9 336 73.5
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 6.9e-129 464.5 339 73.2
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 6.9e-129 464.5 336 73.2
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 2.0e-128 463.0 311 78.1
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 7.6e-128 461.1 300 79.0
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.7e-127 459.9 336 72.6
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 2.9e-127 459.1 339 72.3
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 3.8e-127 458.8 306 76.8
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.1e-126 457.2 302 77.8
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.4e-126 456.8 339 72.6
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.4e-126 456.8 306 77.5
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.4e-126 456.8 335 72.2
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.9e-126 456.4 302 77.8
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.9e-126 456.4 337 73.3
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 2.5e-126 456.1 334 73.4
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 4.2e-126 455.3 333 72.4
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.5e-126 454.9 302 77.8
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 7.1e-126 454.5 341 71.6
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 9.3e-126 454.1 335 71.3
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 2.7e-125 452.6 339 71.1
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 1.8e-124 449.9 336 71.1
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 2.3e-124 449.5 334 70.7
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 3.0e-124 449.1 337 71.5
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 3.9e-124 448.7 336 72.0
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 5.1e-124 448.4 337 71.2
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 6.7e-124 448.0 335 71.9
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 6.7e-124 448.0 339 70.2
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 8.7e-124 447.6 309 74.4
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 8.7e-124 447.6 335 71.3
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.6e-122 443.4 310 77.1
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 2.1e-122 443.0 334 69.8
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 6.2e-122 441.4 303 75.9
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.1e-121 440.7 300 74.7
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.8e-121 439.9 300 75.0
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 5.3e-121 438.3 300 74.7
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 5.3e-121 438.3 342 71.3
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 6.9e-121 438.0 301 76.1
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 1.2e-120 437.2 300 74.3
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 1.5e-120 436.8 300 74.7
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 1.5e-120 436.8 300 74.0
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.0e-120 436.4 303 73.9
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 2.0e-120 436.4 338 66.9
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 3.4e-120 435.6 300 74.3
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 4.5e-120 435.3 336 68.5
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 5.8e-120 434.9 300 74.0
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 7.6e-120 434.5 302 74.8
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 7.6e-120 434.5 315 73.3
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.0e-119 434.1 337 69.7
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 1.0e-119 434.1 304 72.0
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 5.0e-119 431.8 302 73.5
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 8.4e-119 431.0 302 74.2
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 8.4e-119 431.0 302 74.2
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.1e-118 430.6 301 74.8
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.2e-118 429.1 316 74.1
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 4.2e-118 428.7 302 74.8
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 9.3e-118 427.6 302 73.5
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.2e-117 427.2 334 69.8
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 2.1e-117 426.4 333 69.7
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 7.9e-117 424.5 339 66.7
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.0e-116 424.1 335 67.8
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.3e-116 423.7 335 67.8
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 3.9e-116 422.2 333 70.9
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.5e-115 420.2 344 66.3
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 3.3e-115 419.1 339 67.6
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 3.3e-115 419.1 352 67.3
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 4.3e-115 418.7 358 65.9
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.6e-114 416.8 300 73.0
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.8e-114 416.0 335 68.1
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 8.2e-114 414.5 277 77.3
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.8e-113 413.3 343 67.9
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 2.4e-113 412.9 343 68.5
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 2.6e-112 409.5 369 63.1
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 2.6e-112 409.5 317 71.0
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.7e-111 406.8 332 68.4
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 2.9e-111 406.0 342 63.5
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 3.8e-111 405.6 336 65.5
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 1.1e-110 404.1 335 64.8
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 1.9e-110 403.3 309 67.6
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 7.2e-110 401.4 280 73.2
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 7.2e-110 401.4 341 66.6
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 2.7e-109 399.4 291 71.1
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.5e-107 393.7 402 58.2
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.3e-107 392.5 341 63.6
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 9.7e-107 391.0 312 69.2
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.8e-105 386.7 339 62.5
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.2e-101 374.0 268 73.5
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 2.1e-101 373.2 306 65.0
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 3.6e-101 372.5 299 67.6
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.0e-100 370.9 300 65.7
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.8e-100 370.2 337 62.9
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 2.3e-100 369.8 247 78.9
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 1.1e-97 360.9 323 60.4
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 1.8e-97 360.1 353 55.8
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 7.2e-94 348.2 305 63.9
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 2.1e-93 346.7 274 67.5
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 8.2e-90 334.7 248 69.0
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 4.5e-88 328.9 333 53.5
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 7.2e-86 321.6 213 77.0
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.2e-85 320.9 214 77.6
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.6e-85 320.5 237 75.5
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.8e-81 307.0 196 78.1
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 5.5e-78 295.4 279 57.3
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 6.8e-76 288.5 227 68.7
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.6e-71 271.9 206 70.4
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.2e-67 261.2 169 79.3
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 7.8e-64 248.4 169 74.6
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.1e-62 244.6 312 44.2
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 2.2e-58 230.3 169 71.6
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 8.9e-44 181.8 278 41.7
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.2e-40 171.4 150 64.0
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 1.6e-37 161.0 113 71.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 2.3e-31 140.6 103 71.8
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.9e-25 120.9 101 64.4
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 3.2e-25 120.2 93 63.4
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 1.1e-22 111.7 113 54.9
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.6e-22 109.4 246 36.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 3.6e-21 106.7 79 69.6
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 6.2e-21 105.9 99 58.6
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.9e-20 102.4 118 55.9
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 4.5e-19 99.8 100 57.0
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.4e-17 94.7 62 80.6
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.4e-17 94.0 62 77.4
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.5e-17 92.8 61 75.4
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 9.3e-17 92.0 62 77.4
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.1e-13 80.9 56 76.8
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 2.8e-13 80.5 84 47.6
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.8e-13 80.5 55 78.2
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 3.7e-13 80.1 109 44.0
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 4.8e-13 79.7 81 48.1
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 8.4e-10 68.9 37 75.7
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 3.2e-09 67.0 42 78.6
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.7e-08 63.9 53 64.2
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 4.6e-08 63.2 35 88.6
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 4.6e-08 63.2 35 88.6
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 5.1e-07 59.7 124 37.1
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.9e-06 57.8 40 72.5


User provided reference genes

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