Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g012530 Solanum pennellii HOM05D009059 ORTHO05D011207 4.0e-51 204.5 106 100.0
Solyc11g028070.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 4.4e-50 201.1 106 98.1
Solyc11g028040.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.1e-45 186.4 106 91.5
Solyc07g006380.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 3.3e-37 158.3 106 77.4
Sopen07g002470 Solanum pennellii HOM05D009059 ORTHO05D011207 2.3e-35 152.1 106 74.5
Solyc07g150108.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 4.9e-33 144.4 84 84.5
CAN.G584.62 Capsicum annuum HOM05D009059 ORTHO05D011207 4.1e-32 141.4 103 69.9
Solyc07g016095.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 2.0e-31 139.0 84 79.8
CAN.G584.63 Capsicum annuum HOM05D009059 ORTHO05D011207 8.0e-28 127.1 96 65.6
CAN.G1610.5 Capsicum annuum HOM05D009059 ORTHO05D011207 1.2e-26 123.2 103 61.2
CAN.G584.64 Capsicum annuum HOM05D009059 ORTHO05D011207 2.6e-26 122.1 104 60.6
Nitab4.5_0005347g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.3e-25 119.8 106 61.3
CAN.G534.6 Capsicum annuum HOM05D009059 ORTHO05D011207 1.7e-25 119.4 105 61.9
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.9e-24 115.9 106 60.4
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.9e-24 115.9 106 60.4
CAN.G584.65 Capsicum annuum HOM05D009059 ORTHO05D011207 7.0e-24 114.0 103 58.3
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 9.2e-24 113.6 104 58.7
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.7e-23 112.1 106 57.5
CAN.G584.67 Capsicum annuum HOM05D009059 ORTHO05D011207 6.0e-23 110.9 103 55.3
CAN.G1084.27 Capsicum annuum HOM05D009059 ORTHO05D011207 7.8e-23 110.5 103 54.4
Nitab4.5_0003165g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.3e-22 109.8 106 59.4
CAN.G1610.6 Capsicum annuum HOM05D009059 ORTHO05D011207 1.2e-20 103.2 81 60.5
CAN.G3387.1 Capsicum annuum HOM05D009059 ORTHO05D011207 2.8e-20 102.1 82 58.5
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.8e-20 102.1 106 53.8
Solyc11g028060.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 2.3e-19 99.0 56 89.3
CAN.G1084.28 Capsicum annuum HOM05D009059 ORTHO05D011207 4.0e-19 98.2 85 55.3
Solyc07g016113.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 3.7e-17 91.7 109 53.2
Solyc07g016120.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 3.7e-17 91.7 59 76.3
Sopen07g005870 Solanum pennellii HOM05D000082 ORTHO05D000038 1.1e-16 90.1 55 83.6
CAN.G1084.24 Capsicum annuum HOM05D009059 ORTHO05D011207 5.4e-16 87.8 107 47.7
Peaxi162Scf00297g00815 Petunia axillaris HOM05D009059 ORTHO05D011207 4.6e-15 84.7 105 45.7
Peaxi162Scf00297g00816 Petunia axillaris HOM05D009059 ORTHO05D011207 1.3e-14 83.2 104 41.3
CAN.G5797.1 Capsicum annuum HOM05D009059 ORTHO05D011207 3.0e-14 82.0 49 73.5
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.9e-14 81.6 83 53.0
Peaxi162Scf00005g00041 Petunia axillaris HOM05D009059 ORTHO05D011207 1.5e-13 79.7 105 42.9
CAN.G1084.29 Capsicum annuum HOM05D009059 ORTHO05D011207 9.5e-13 77.0 62 56.5
Peaxi162Scf00005g00035 Petunia axillaris HOM05D009059 ORTHO05D011207 1.4e-11 73.2 105 40.0
Os02g0172000 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 3.4e-10 68.6 51 52.9
SGA_v2.0_scaffold23G10223 Striga asiatica HOM05D001231 ORTHO05D001012 1.7e-09 66.2 68 48.5
Medtr3g032570 Medicago truncatula HOM05D001231 ORTHO05D001012 6.4e-09 64.3 80 41.2
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 1.1e-08 63.5 77 39.0
Phvul.003G282500 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.1e-08 63.5 78 39.7
Glyma.16G100400 Glycine max HOM05D001231 ORTHO05D001012 1.4e-08 63.2 79 39.2
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.4e-08 63.2 64 40.6
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.9e-08 62.8 78 39.7
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.9e-08 62.8 71 40.8
CAN.G458.12 Capsicum annuum HOM05D001231 ORTHO05D001012 2.4e-08 62.4 66 43.9
Lalb_Chr16g0392501 Lupinus albus HOM05D001231 ORTHO05D001012 2.4e-08 62.4 52 51.9
Carub.0008s2442 Capsella rubella HOM05D001231 ORTHO05D001012 5.4e-08 61.2 68 41.2
Glyma.08G005300 Glycine max HOM05D001231 ORTHO05D001012 5.4e-08 61.2 45 53.3
Psat4g112000 Pisum sativum HOM05D001231 ORTHO05D001012 5.4e-08 61.2 76 42.1
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 5.4e-08 61.2 76 42.1
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 5.4e-08 61.2 77 41.6
Peaxi162Scf00025g00313 Petunia axillaris HOM05D001231 ORTHO05D001012 7.1e-08 60.8 67 41.8
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 9.2e-08 60.5 78 38.5
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 9.2e-08 60.5 47 48.9
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 1.2e-07 60.1 71 42.3
CAN.G976.4 Capsicum annuum HOM05D001231 ORTHO05D001012 1.6e-07 59.7 80 40.0
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 1.6e-07 59.7 71 39.4
MD13G1011600 Malus domestica HOM05D001231 ORTHO05D001012 1.6e-07 59.7 54 40.7
Prupe.1G341700 Prunus persica HOM05D001231 ORTHO05D001012 1.6e-07 59.7 79 38.0
Solyc07g007755.1 Solanum lycopersicum HOM05D001231 ORTHO05D001012 1.6e-07 59.7 78 39.7
PGSC0003DMG400015133 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.6e-07 59.7 45 53.3
PGSC0003DMG400029484 Solanum tuberosum HOM05D001231 ORTHO05D001012 2.1e-07 59.3 66 40.9
CANSAT54G0755 Cannabis sativa HOM05D001231 ORTHO05D001012 2.7e-07 58.9 63 44.4
AT2G31957 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 3.5e-07 58.5 51 45.1
Gohir.D01G023523 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.5e-07 58.5 62 41.9
Glyma.08G268000 Glycine max HOM05D001231 ORTHO05D001012 4.6e-07 58.2 76 38.2
Lj4g0025743 Lotus japonicus HOM05D001231 ORTHO05D001012 4.6e-07 58.2 78 38.5
MD11G1113600 Malus domestica HOM05D001231 ORTHO05D001012 4.6e-07 58.2 54 44.4
Migut.J01199 Erythranthe guttata HOM05D001231 ORTHO05D001012 6.0e-07 57.8 73 39.7
MD02G1207600 Malus domestica HOM05D001231 ORTHO05D001012 6.0e-07 57.8 54 46.3
Medtr8g070770 Medicago truncatula HOM05D001231 ORTHO05D001012 6.0e-07 57.8 76 39.5
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 6.0e-07 57.8 80 38.8
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 6.0e-07 57.8 80 38.8
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 6.0e-07 57.8 73 39.7
Sopen07g001020 Solanum pennellii HOM05D001231 ORTHO05D001012 6.0e-07 57.8 78 38.5
CAN.G976.2 Capsicum annuum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 78 35.9
Migut.M01516 Erythranthe guttata HOM05D001231 ORTHO05D001012 7.8e-07 57.4 71 39.4
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 7.8e-07 57.4 67 43.3
MD11G1108800 Malus domestica HOM05D001231 ORTHO05D001012 7.8e-07 57.4 54 44.4
MD14G1073000 Malus domestica HOM05D001231 ORTHO05D001012 7.8e-07 57.4 54 46.3
Nitab4.5_0000374g0050 Nicotiana tabacum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 78 38.5
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 78 42.3
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 79 40.5
Cc06_g07880 Coffea canephora HOM05D001231 ORTHO05D001012 1.0e-06 57.0 78 41.0
MD13G1011700 Malus domestica HOM05D001231 ORTHO05D001012 1.0e-06 57.0 54 46.3
Nitab4.5_0009181g0010 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.0e-06 57.0 78 37.2
Os04g0189400 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 1.0e-06 57.0 45 46.7
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.0e-06 57.0 67 41.8
Prupe.1G341600 Prunus persica HOM05D001231 ORTHO05D001012 1.0e-06 57.0 87 35.6
SalBow6G2289 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.0e-06 57.0 66 39.4
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 1.3e-06 56.6 71 38.0
PGSC0003DMG400015130 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.3e-06 56.6 78 37.2
EL10Ac5g10882 Beta vulgaris HOM05D001231 ORTHO05D001012 1.7e-06 56.2 70 40.0
CARHR144760 Cardamine hirsuta HOM05D001231 ORTHO05D001012 1.7e-06 56.2 78 38.5
Ca_17033_v3 Cicer arietinum L. HOM05D001231 ORTHO05D001012 1.7e-06 56.2 70 38.6
FvH4_4g36102 Fragaria vesca HOM05D001231 ORTHO05D001012 1.7e-06 56.2 71 42.3
FAN07G0709 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.7e-06 56.2 71 42.3
Os02g0172300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 1.7e-06 56.2 66 39.4
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.7e-06 56.2 68 41.2
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 69 37.7
FAN22G0227 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.3e-06 55.8 71 42.3
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 2.3e-06 55.8 77 37.7
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 2.3e-06 55.8 65 40.0
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.3e-06 55.8 66 36.4
Sopen07g001060 Solanum pennellii HOM05D001231 ORTHO05D001012 2.3e-06 55.8 78 38.5
CAN.G976.3 Capsicum annuum HOM05D001231 ORTHO05D001012 3.0e-06 55.5 73 37.0
Gohir.D01G023526 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.0e-06 55.5 74 40.5
Gorai.002G029700 Gossypium raimondii HOM05D001231 ORTHO05D001012 3.0e-06 55.5 74 40.5
Medtr8g075980 Medicago truncatula HOM05D001231 ORTHO05D001012 3.0e-06 55.5 68 39.7
SEGI_34828 Sequoiadendron giganteum HOM05D001231 ORTHO05D001012 3.0e-06 55.5 77 42.9
BolC2t12358H Brassica oleracea HOM05D001231 ORTHO05D001012 3.9e-06 55.1 63 42.9
Ciclev10005867m.g Citrus clementina HOM05D001231 ORTHO05D001012 3.9e-06 55.1 63 38.1
FvH4_4g36104 Fragaria vesca HOM05D001231 ORTHO05D001012 3.9e-06 55.1 71 40.8
Hund22171 Selenicereus undatus HOM05D001231 ORTHO05D001012 3.9e-06 55.1 76 35.5
Solyc04g008470.3 Solanum lycopersicum HOM05D001231 ORTHO05D001012 3.9e-06 55.1 66 36.4
Actinidia36588 Actinidia chinensis HOM05D001231 ORTHO05D001012 5.1e-06 54.7 76 39.5
Gorai.002G029500 Gossypium raimondii HOM05D001231 ORTHO05D001012 5.1e-06 54.7 74 40.5
Lj4g0007075 Lotus japonicus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 71 33.8
Lalb_Chr11g0068851 Lupinus albus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 72 36.1
Lalb_Chr12g0202761 Lupinus albus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 70 42.9
MD02G1301000 Malus domestica HOM05D001231 ORTHO05D001012 5.1e-06 54.7 65 40.0
MD13G1011800 Malus domestica HOM05D001231 ORTHO05D001012 5.1e-06 54.7 79 38.0
Hund02690 Selenicereus undatus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 70 35.7
Sopen07g003700 Solanum pennellii HOM05D001231 ORTHO05D001012 5.1e-06 54.7 69 37.7
A02p42920 Brassica napus HOM05D001231 ORTHO05D001012 6.6e-06 54.3 67 41.8
C02p62860 Brassica napus HOM05D001231 ORTHO05D001012 6.6e-06 54.3 67 41.8
Migut.E00740 Erythranthe guttata HOM05D001231 ORTHO05D001012 6.6e-06 54.3 63 34.9
FAN12G0873 Fragaria x ananassa HOM05D001184 ORTHO05D003397 6.6e-06 54.3 98 34.7
Glyma.06G160300 Glycine max HOM05D001231 ORTHO05D001012 6.6e-06 54.3 76 39.5
Gohir.A01G033800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 47 48.9
Peaxi162Scf00072g01012 Petunia axillaris HOM05D001231 ORTHO05D001012 6.6e-06 54.3 67 37.3
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 69 34.8
RcHm_v2.0_Chr4g0445851 Rosa chinensis HOM05D001231 ORTHO05D001012 6.6e-06 54.3 72 36.1
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 8.6e-06 53.9 47 44.7
Gorai.002G029600 Gossypium raimondii HOM05D001231 ORTHO05D001012 8.6e-06 53.9 71 36.6
Lj1g0011574 Lotus japonicus HOM05D001231 ORTHO05D001012 8.6e-06 53.9 72 36.1
MBI06_g26879_MAGBIO Magnolia biondii HOM05D001231 ORTHO05D001012 8.6e-06 53.9 45 51.1
MD11G1108400 Malus domestica HOM05D001231 ORTHO05D001012 8.6e-06 53.9 87 33.3
RcHm_v2.0_Chr4g0445791 Rosa chinensis HOM05D001231 ORTHO05D001012 8.6e-06 53.9 72 36.1
VMungo1309G2262 Vigna mungo HOM05D001231 ORTHO05D001012 8.6e-06 53.9 65 40.0


User provided reference genes

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