Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 3.0e-122 441.8 216 100.0
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 3.7e-120 434.9 216 98.1
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 2.0e-110 402.5 216 90.3
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.7e-107 392.1 217 89.9
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.6e-105 385.6 217 87.6
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 2.9e-101 372.1 216 83.8
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 2.7e-78 295.8 217 66.4
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 7.7e-78 294.3 217 65.0
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 7.3e-76 287.7 218 64.2
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 4.0e-74 282.0 219 65.3
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 5.2e-74 281.6 217 63.1
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.0e-73 279.6 219 64.8
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 2.6e-73 279.3 217 62.2
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 5.7e-73 278.1 217 62.7
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 7.5e-73 277.7 217 63.6
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 2.4e-71 272.7 218 62.4
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 2.4e-71 272.7 218 62.4
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 5.4e-71 271.6 222 62.2
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 7.0e-71 271.2 193 68.4
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 7.0e-71 271.2 218 62.8
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 2.0e-70 269.6 219 63.5
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.0e-70 269.6 217 62.2
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 3.5e-70 268.9 218 62.8
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 3.9e-69 265.4 217 62.2
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 1.1e-68 263.8 219 62.6
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 1.9e-68 263.1 171 73.1
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 1.2e-67 260.4 222 58.6
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 1.6e-67 260.0 211 59.7
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 2.1e-67 259.6 218 62.4
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 2.8e-67 259.2 217 58.1
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 3.6e-67 258.8 217 59.0
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 3.6e-67 258.8 219 58.4
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 6.2e-67 258.1 221 58.4
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 8.0e-67 257.7 217 56.7
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 8.0e-67 257.7 219 56.6
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 1.0e-66 257.3 217 60.8
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 4.0e-66 255.4 217 57.1
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 8.9e-66 254.2 196 63.3
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 8.9e-66 254.2 217 58.1
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 1.5e-65 253.4 217 61.8
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 1.5e-65 253.4 219 59.4
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 2.0e-65 253.1 206 63.1
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 2.0e-65 253.1 217 59.9
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 2.0e-65 253.1 217 58.1
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 2.6e-65 252.7 219 59.8
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 4.4e-65 251.9 221 61.5
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 5.8e-65 251.5 217 58.1
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 5.8e-65 251.5 217 58.1
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 5.8e-65 251.5 221 56.1
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 5.8e-65 251.5 219 58.9
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 9.8e-65 250.8 219 58.9
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.7e-64 250.0 160 71.2
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 3.7e-64 248.8 217 56.7
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 8.3e-64 247.7 217 60.4
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 1.1e-63 247.3 158 73.4
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 1.1e-63 247.3 219 55.7
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 1.9e-63 246.5 202 63.4
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 1.9e-63 246.5 216 57.4
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 2.4e-63 246.1 219 55.3
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 4.1e-63 245.4 216 58.3
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 9.2e-63 244.2 158 70.3
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 1.6e-62 243.4 216 57.9
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 1.6e-62 243.4 216 56.5
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 2.7e-62 242.7 216 56.5
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 3.5e-62 242.3 217 56.2
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 6.0e-62 241.5 219 58.4
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 7.8e-62 241.1 217 55.8
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 7.8e-62 241.1 217 55.8
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 1.3e-61 240.4 219 57.1
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 3.0e-61 239.2 219 57.1
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 5.0e-61 238.4 216 56.9
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 6.6e-61 238.0 171 66.1
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 8.6e-61 237.7 220 54.5
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.5e-60 236.9 221 59.3
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 1.9e-60 236.5 201 58.7
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 3.3e-60 235.7 218 57.8
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 4.3e-60 235.3 192 60.9
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 5.6e-60 235.0 217 56.2
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 9.5e-60 234.2 224 56.7
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 1.2e-59 233.8 217 55.3
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 1.1e-58 230.7 219 57.1
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 2.3e-58 229.6 216 54.6
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 5.2e-58 228.4 218 55.5
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 2.0e-57 226.5 216 54.6
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 1.3e-56 223.8 221 53.4
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 2.1e-54 216.5 217 50.7
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 1.3e-53 213.8 141 70.2
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 1.5e-52 210.3 145 66.2
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 1.9e-52 209.9 198 55.6
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 2.1e-51 206.5 217 49.8
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 4.6e-46 188.7 223 46.6
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 1.0e-45 187.6 133 63.9
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 8.9e-42 174.5 177 48.0
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 5.8e-41 171.8 161 55.3
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 2.2e-40 169.9 134 55.2
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 1.1e-39 167.5 231 41.6
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 9.3e-39 164.5 149 53.0
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.8e-34 150.2 170 44.7
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 9.9e-33 144.4 148 47.3
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.8e-29 133.7 149 50.3
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.5e-28 130.6 139 52.5
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 1.3e-27 127.5 145 42.1
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.8e-27 125.6 82 68.3
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 8.4e-24 114.8 52 98.1
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 1.0e-16 91.3 148 36.5
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 2.2e-16 90.1 54 77.8
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 1.3e-11 74.3 44 72.7


User provided reference genes

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