Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.5e-173 612.8 320 100.0
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.4e-168 595.5 320 97.8
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 1.9e-165 585.9 320 95.9
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.5e-149 533.1 320 88.1
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 8.9e-147 523.9 320 86.2
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.9e-133 479.6 322 83.2
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 2.5e-104 382.9 269 73.6
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 5.1e-102 375.2 323 65.3
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 6.7e-102 374.8 303 68.0
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.9e-101 373.2 325 65.2
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 2.5e-101 372.9 306 68.3
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.7e-100 369.0 340 62.9
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 4.8e-100 368.6 248 77.0
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.2e-98 364.0 327 63.0
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.6e-98 362.8 217 84.3
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.6e-98 362.8 320 64.1
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.0e-97 360.9 332 62.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.7e-97 360.1 220 84.1
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.1e-96 357.5 220 84.1
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.4e-96 357.1 253 72.3
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.2e-96 355.9 253 74.7
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 9.3e-96 354.4 222 81.5
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.2e-95 354.0 220 83.6
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.1e-95 353.2 222 81.5
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 4.6e-95 352.1 222 81.1
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 6.1e-95 351.7 246 74.4
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 7.9e-95 351.3 229 78.6
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 7.9e-95 351.3 215 84.2
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.0e-94 350.9 223 79.8
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.0e-94 350.9 217 83.4
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.0e-94 350.9 217 83.4
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 1.0e-94 350.9 251 74.9
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.3e-94 350.5 230 80.0
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.3e-94 350.5 216 83.8
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.8e-94 350.1 233 77.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.8e-94 350.1 233 77.7
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.8e-94 350.1 239 75.3
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 3.0e-94 349.4 241 75.9
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 5.1e-94 348.6 239 76.2
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 8.7e-94 347.8 321 61.7
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.1e-93 347.4 239 76.6
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.5e-93 347.1 232 78.9
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.5e-93 346.3 220 82.7
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.5e-93 346.3 217 81.1
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 7.4e-93 344.7 217 81.6
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 9.7e-93 344.4 229 77.7
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 9.7e-93 344.4 222 78.8
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 9.7e-93 344.4 217 80.2
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.3e-92 344.0 217 82.5
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.3e-92 344.0 232 77.6
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 3.7e-92 342.4 223 77.6
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 4.8e-92 342.0 262 68.7
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 5.3e-91 338.6 258 71.7
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 6.9e-91 338.2 224 79.5
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.5e-90 337.0 322 60.9
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 2.0e-90 336.7 214 78.5
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 2.6e-90 336.3 223 77.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.4e-90 335.9 261 70.9
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 4.5e-90 335.5 277 65.0
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 4.5e-90 335.5 371 55.0
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 5.9e-90 335.1 322 60.2
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.0e-89 334.3 278 67.6
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.3e-89 334.0 246 70.3
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 2.2e-89 333.2 214 77.1
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.9e-89 332.8 218 77.1
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 3.8e-89 332.4 218 76.6
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 5.0e-89 332.0 219 76.3
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 5.0e-89 332.0 218 76.6
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.0e-89 332.0 218 76.6
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.5e-89 331.6 218 76.6
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.4e-88 330.5 220 79.5
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.4e-88 330.5 218 76.6
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.9e-88 330.1 220 79.5
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 3.2e-88 329.3 220 79.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 4.2e-88 328.9 220 79.5
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 7.2e-88 328.2 204 82.4
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 9.4e-88 327.8 204 82.4
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 9.4e-88 327.8 242 72.3
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.2e-87 327.4 215 78.1
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.2e-87 327.4 217 77.0
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.6e-87 327.0 204 82.4
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 1.6e-87 327.0 217 76.0
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.1e-87 326.6 220 78.2
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 2.1e-87 326.6 268 66.8
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.7e-87 326.2 321 58.9
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 4.6e-87 325.5 220 78.2
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 3.0e-86 322.8 218 77.1
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.0e-86 322.8 220 77.3
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 6.7e-86 321.6 218 76.6
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.1e-85 320.9 214 77.1
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.1e-85 320.9 244 68.9
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 1.1e-85 320.9 214 76.6
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.5e-85 320.5 214 77.1
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.5e-85 320.5 218 74.8
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 2.0e-85 320.1 202 81.2
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 2.6e-85 319.7 215 75.8
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 4.4e-85 318.9 230 72.2
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 7.4e-85 318.2 204 79.9
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 7.4e-85 318.2 190 83.7
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.7e-84 317.0 215 73.5
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 2.2e-84 316.6 217 74.2
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 7.7e-82 308.1 202 78.7
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 2.2e-81 306.6 202 78.2
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.8e-78 297.0 163 90.8
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 6.3e-76 288.5 224 67.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 5.3e-75 285.4 223 70.4
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.2e-72 275.8 208 68.3
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 1.4e-70 270.8 207 65.7
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 4.5e-66 255.8 319 51.7
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 4.4e-61 239.2 190 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 5.7e-61 238.8 182 63.7
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 5.7e-61 238.8 141 81.6
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.4e-51 207.6 182 56.6
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.3e-49 201.1 165 59.4
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.3e-49 200.3 225 50.2
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 6.1e-47 192.2 181 52.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.4e-46 191.0 133 75.2
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 8.3e-44 181.8 176 50.0
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 2.0e-42 177.2 222 45.0
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 9.5e-40 168.3 141 63.8
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.7e-33 147.5 156 55.1
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 5.1e-25 119.4 150 40.0
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 9.5e-24 115.2 65 86.2
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 1.3e-20 104.8 109 58.7
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.5e-16 91.3 53 83.0
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 7.3e-16 89.0 75 65.3
DCAR_019223 Daucus carota HOM05D001558 ORTHO05D021140 6.9e-06 55.8 73 32.9


User provided reference genes

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