Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 7.3e-217 756.9 375 100.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.4e-212 742.7 373 98.4
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.3e-189 666.4 374 87.7
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.1e-163 579.3 329 87.2
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 3.6e-163 578.6 333 86.8
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.0e-149 531.6 402 70.6
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 6.6e-141 504.6 334 74.0
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.0e-133 480.7 357 66.1
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 6.6e-133 478.0 355 65.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.9e-132 476.5 360 65.3
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 7.5e-129 464.5 330 67.9
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 8.3e-128 461.1 374 60.7
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 9.2e-127 457.6 360 63.6
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 3.5e-126 455.7 374 60.7
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 6.0e-126 454.9 322 67.1
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 6.0e-126 454.9 347 65.1
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 7.8e-126 454.5 342 63.7
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.0e-125 454.1 337 66.2
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.3e-125 453.8 329 67.5
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 2.3e-125 453.0 322 67.1
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.0e-125 452.6 366 62.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 8.6e-125 451.1 342 65.2
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.9e-124 449.9 324 66.7
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 7.3e-124 448.0 332 64.8
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.2e-123 447.2 332 66.0
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 1.2e-123 447.2 341 65.1
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.6e-123 446.8 340 63.5
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.1e-123 446.4 358 62.6
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 3.6e-123 445.7 360 62.5
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 6.2e-123 444.9 352 62.8
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.8e-122 443.4 327 66.7
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.1e-122 442.6 332 63.6
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.1e-122 442.6 328 65.2
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 4.0e-122 442.2 332 63.9
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 5.2e-122 441.8 358 62.0
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 8.9e-122 441.0 357 61.9
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 8.9e-122 441.0 346 63.0
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 8.9e-122 441.0 324 65.7
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.5e-121 440.3 297 73.7
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 2.0e-121 439.9 332 63.0
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 2.0e-121 439.9 322 65.5
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 2.6e-121 439.5 323 66.3
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 3.4e-121 439.1 322 65.5
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 4.4e-121 438.7 355 61.1
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 7.5e-121 438.0 355 60.8
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 9.8e-121 437.6 327 64.5
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.7e-120 436.8 327 64.5
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.7e-120 435.6 347 60.8
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 3.7e-120 435.6 335 63.0
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 4.9e-120 435.3 357 59.9
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 6.4e-120 434.9 327 63.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 6.4e-120 434.9 334 63.2
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 6.4e-120 434.9 335 63.0
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 6.4e-120 434.9 320 65.0
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.1e-119 434.1 333 63.4
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.4e-119 433.7 334 63.2
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.4e-119 433.7 329 62.6
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.9e-119 433.3 333 63.7
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.9e-119 433.3 323 64.1
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.9e-119 433.3 351 62.4
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.4e-119 433.0 330 62.1
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 3.2e-119 432.6 327 63.3
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 3.2e-119 432.6 335 63.0
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 3.2e-119 432.6 324 64.2
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 5.4e-119 431.8 332 63.0
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 9.2e-119 431.0 347 62.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 4.6e-118 428.7 324 63.3
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.3e-117 427.2 328 63.1
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.7e-117 426.8 311 66.6
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.3e-117 426.4 327 62.7
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.3e-117 426.4 355 60.8
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.0e-117 426.0 327 63.6
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 3.9e-117 425.6 349 60.2
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 8.6e-117 424.5 332 61.7
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.1e-116 424.1 317 64.7
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.2e-115 420.6 357 59.7
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 5.2e-114 415.2 332 58.7
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 8.9e-114 414.5 324 62.3
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 8.9e-114 414.5 323 63.5
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 4.4e-113 412.1 321 63.6
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 4.4e-113 412.1 335 63.0
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 2.9e-112 409.5 365 57.8
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 2.4e-111 406.4 366 55.5
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 5.4e-111 405.2 326 59.5
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 5.4e-111 405.2 340 59.1
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 2.1e-110 403.3 320 62.8
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.0e-109 399.4 333 59.8
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.9e-109 399.1 333 59.8
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.2e-107 394.0 296 66.2
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 2.1e-107 393.3 451 49.2
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 2.8e-107 392.9 337 59.6
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 3.6e-107 392.5 344 57.0
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 4.7e-107 392.1 377 52.5
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 6.2e-107 391.7 340 56.8
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 8.9e-106 387.9 313 59.4
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 8.9e-106 387.9 340 56.5
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 2.9e-104 382.9 268 66.0
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.4e-103 380.6 370 53.5
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.0e-101 372.9 325 58.5
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 6.6e-101 371.7 322 56.5
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 3.3e-100 369.4 360 55.0
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 9.6e-100 367.9 286 62.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.8e-99 366.3 271 66.4
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 6.2e-99 365.2 330 54.2
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 4.4e-97 359.0 240 67.5
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.2e-95 352.8 319 58.0
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 4.2e-95 352.4 311 58.8
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 4.2e-95 352.4 311 58.8
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.2e-94 350.9 330 54.2
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 6.0e-94 348.6 267 63.7
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.9e-92 343.6 296 58.4
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 5.6e-92 342.0 292 59.6
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.6e-91 340.5 259 64.1
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 1.4e-90 337.4 376 48.7
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.4e-89 332.8 306 50.7
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.3e-85 320.1 322 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 3.9e-85 319.3 274 54.7
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.1e-84 317.8 256 60.9
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.5e-81 307.4 334 44.3
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.6e-78 297.4 206 68.0
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-74 284.6 246 54.5
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 1.4e-74 284.3 199 66.8
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.3e-69 266.9 320 47.2
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.5e-68 264.2 178 70.2
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 3.1e-66 256.5 289 41.5
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 3.1e-66 256.5 247 49.8
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 5.5e-63 245.7 388 40.5
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.1e-62 242.3 211 58.3
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.1e-61 239.2 307 45.3
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.7e-54 216.9 281 41.6
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 4.5e-49 199.5 258 41.1
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 7.7e-49 198.7 290 36.2
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.5e-47 193.7 160 57.5
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 6.7e-45 185.7 137 62.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.8e-43 179.5 156 53.8
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 2.2e-40 170.6 214 43.5
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.9e-40 170.2 214 43.5
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 8.5e-40 168.7 197 47.7
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 4.2e-39 166.4 351 34.5
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.6e-38 163.3 131 59.5
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.6e-30 136.7 154 45.5
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 6.8e-29 132.5 81 75.3
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 5.0e-24 116.3 276 31.5
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 4.7e-22 109.8 152 42.8
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 7.0e-18 95.9 118 45.8
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.3e-16 91.7 93 53.8
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.3e-16 91.7 93 53.8
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 5.0e-16 89.7 71 56.3
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 8.6e-16 89.0 190 33.7
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 8.9e-13 79.0 59 67.8
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.0e-12 77.8 114 43.0
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 5.8e-12 76.3 50 72.0
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.8e-09 65.9 42 64.3
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 5.0e-08 63.2 56 55.4


User provided reference genes

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