Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.2e-141 506.9 257 100.0
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.4e-134 483.4 257 96.1
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.0e-129 467.2 260 92.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 4.3e-123 445.3 233 94.4
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.5e-115 419.5 262 81.3
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 7.3e-115 417.9 236 88.6
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.1e-98 363.2 256 71.5
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 8.1e-98 361.3 246 73.6
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.2e-96 357.5 255 69.8
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.5e-96 357.1 257 72.4
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.4e-96 355.9 241 72.6
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.4e-96 355.9 240 72.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.8e-96 355.1 241 72.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 9.9e-96 354.4 255 68.6
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.7e-95 353.6 256 71.1
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.2e-95 353.2 252 70.2
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 6.4e-95 351.7 223 74.4
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 6.4e-95 351.7 255 68.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 4.1e-94 349.0 256 68.4
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 4.1e-94 349.0 254 69.3
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.1e-94 349.0 255 67.8
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 2.7e-93 346.3 233 71.2
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 6.0e-93 345.1 245 71.0
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 7.8e-93 344.7 253 70.0
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 7.8e-93 344.7 222 75.7
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.0e-92 344.4 257 68.1
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.7e-92 343.6 234 72.2
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.7e-92 343.6 237 71.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.7e-92 343.6 256 67.6
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.9e-92 342.4 257 68.5
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 5.1e-92 342.0 234 71.8
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.1e-91 340.9 257 67.7
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.5e-91 340.5 275 64.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.5e-91 340.5 218 74.3
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.9e-91 340.1 255 66.7
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.3e-91 339.0 255 70.2
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 5.6e-91 338.6 257 68.9
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 7.3e-91 338.2 253 67.6
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 9.6e-91 337.8 222 73.4
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.2e-90 337.4 254 68.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 4.7e-90 335.5 255 67.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 4.7e-90 335.5 256 65.2
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.4e-89 334.0 237 71.3
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.4e-89 334.0 255 65.5
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.8e-89 333.6 230 73.5
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.8e-89 333.6 256 67.6
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.4e-89 333.2 255 65.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 8.9e-89 331.3 274 63.9
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 8.9e-89 331.3 233 70.0
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.5e-88 330.5 214 76.2
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.5e-88 330.5 238 72.3
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.0e-88 330.1 251 66.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.7e-87 327.0 256 64.8
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 6.4e-87 325.1 215 72.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 3.2e-86 322.8 205 74.1
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 5.4e-86 322.0 230 70.0
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.6e-85 320.5 230 69.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.6e-85 320.5 255 66.3
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.6e-85 320.5 236 67.8
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.7e-85 319.7 256 64.5
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 7.8e-85 318.2 255 64.7
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.8e-85 318.2 212 72.6
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.0e-84 317.8 229 69.4
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.7e-84 317.0 247 66.8
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.1e-83 314.3 188 77.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.5e-83 313.9 256 63.7
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.9e-83 313.5 252 63.9
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 4.3e-83 312.4 255 62.0
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 9.6e-83 311.2 257 64.6
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.8e-82 309.7 318 53.1
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.8e-81 307.0 257 63.4
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 5.3e-81 305.4 256 64.8
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 9.0e-81 304.7 256 64.1
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.2e-80 304.3 278 58.3
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.5e-80 303.9 202 74.3
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.6e-80 303.1 224 68.3
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 2.6e-80 303.1 229 65.9
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 5.8e-80 302.0 244 63.5
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.6e-80 301.6 210 70.5
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 7.6e-80 301.6 184 77.2
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 9.9e-80 301.2 256 63.3
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 9.9e-80 301.2 255 63.9
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 2.9e-79 299.7 233 63.5
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.4e-79 298.5 222 68.0
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-78 297.7 230 67.4
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.1e-78 297.7 256 62.9
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.9e-78 297.0 256 61.7
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.2e-78 296.2 230 67.0
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.2e-78 295.8 256 62.9
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 4.2e-78 295.8 230 67.0
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.1e-78 295.0 227 68.7
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.2e-77 294.3 256 62.5
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.2e-77 294.3 225 68.0
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.7e-77 293.1 230 65.7
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.7e-77 293.1 230 65.7
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.5e-77 292.7 231 67.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.5e-77 292.7 231 67.5
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 3.9e-76 289.3 232 63.8
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 6.7e-76 288.5 266 58.3
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.9e-75 287.0 256 59.4
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 2.1e-74 283.5 221 65.2
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 8.1e-74 281.6 229 63.3
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 4.0e-73 279.3 193 69.9
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.8e-72 275.4 255 60.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.2e-71 273.5 180 73.3
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.2e-69 267.7 179 69.8
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.3e-68 263.5 195 68.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.6e-66 257.3 178 66.3
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.0e-64 250.4 185 68.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.5e-59 234.2 209 55.5
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.0e-55 221.5 139 77.7
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.8e-55 219.5 203 52.7
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.9e-54 217.2 190 56.3
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.6e-53 214.2 217 49.3
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.6e-48 196.8 213 48.8
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 9.4e-46 188.3 201 47.8
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.3e-44 183.7 135 62.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 2.6e-43 180.3 173 59.5
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 4.4e-43 179.5 298 43.0
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.8e-33 147.5 233 36.5
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.8e-33 147.5 94 75.5
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.8e-33 147.5 96 74.0
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.2e-32 144.8 177 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 4.2e-30 136.3 179 43.0
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.5e-30 136.0 97 66.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-28 128.6 215 32.1
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.5e-22 111.3 69 75.4
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 6.1e-21 105.9 197 32.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.4e-19 100.1 139 43.9
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.4e-17 94.0 94 51.1
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.6e-16 91.3 226 30.5
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.6e-13 80.1 209 28.7
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.8e-10 70.5 98 38.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 6.3e-10 69.3 79 51.9
PRCOL_00005492 Prasinoderma coloniale HOM05D005493 ORTHO05D333432 2.9e-07 60.5 191 24.1
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.5e-06 58.2 112 26.8
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.5e-06 58.2 82 52.4


User provided reference genes

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