Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 2.9e-196 688.3 339 100.0
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 1.1e-190 669.8 339 97.1
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 5.5e-155 551.2 346 81.5
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 4.2e-147 525.0 334 80.5
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 9.5e-139 497.3 324 80.2
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 9.5e-131 470.7 251 91.2
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.1e-121 440.7 356 62.1
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 8.3e-119 431.0 341 63.3
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 5.4e-118 428.3 290 71.7
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 2.3e-116 422.9 333 63.7
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 2.5e-115 419.5 337 62.6
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 2.1e-114 416.4 293 67.9
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 2.1e-114 416.4 208 96.2
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 8.1e-114 414.5 291 68.4
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 2.9e-111 406.0 289 67.1
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 3.7e-111 405.6 287 67.9
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 1.9e-110 403.3 291 64.9
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.4e-110 402.9 333 61.0
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 3.2e-110 402.5 289 65.4
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 2.7e-109 399.4 293 65.2
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 1.3e-108 397.1 349 59.3
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 6.6e-108 394.8 331 58.6
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 1.5e-107 393.7 288 65.6
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 3.3e-107 392.5 328 61.6
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 7.3e-107 391.3 282 67.0
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 1.2e-106 390.6 341 57.8
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 2.8e-106 389.4 285 64.6
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.7e-106 388.7 288 66.0
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 6.2e-106 388.3 317 62.1
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 1.1e-105 387.5 333 58.6
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 1.1e-105 387.5 289 65.1
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 1.1e-105 387.5 324 61.7
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 1.1e-105 387.5 293 64.2
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 1.4e-105 387.1 343 58.9
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 1.8e-105 386.7 331 58.3
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 2.4e-105 386.3 339 59.6
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 2.4e-105 386.3 324 60.2
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 3.1e-105 386.0 288 65.3
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 4.0e-105 385.6 333 58.3
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 5.2e-105 385.2 329 60.2
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 6.8e-105 384.8 333 61.3
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 6.8e-105 384.8 333 61.3
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 6.8e-105 384.8 289 62.6
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 8.9e-105 384.4 345 57.7
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 2.6e-104 382.9 343 58.6
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 2.6e-104 382.9 295 64.7
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 3.4e-104 382.5 282 66.7
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 3.4e-104 382.5 343 58.6
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 4.4e-104 382.1 333 57.7
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 5.8e-104 381.7 326 59.8
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 7.6e-104 381.3 293 63.5
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 2.9e-103 379.4 290 65.2
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 2.9e-103 379.4 282 65.6
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 6.4e-103 378.3 315 62.2
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 1.1e-102 377.5 312 61.5
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.1e-102 377.5 307 58.6
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 4.2e-102 375.6 318 60.4
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 4.2e-102 375.6 324 59.0
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 7.1e-102 374.8 282 63.5
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 1.2e-101 374.0 313 59.1
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 1.6e-101 373.6 282 64.2
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 2.7e-101 372.9 307 57.7
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 4.6e-101 372.1 290 64.1
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 1.3e-100 370.5 401 50.1
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 2.3e-100 369.8 282 62.8
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 5.1e-100 368.6 295 63.4
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 6.6e-100 368.2 296 59.1
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 8.7e-100 367.9 289 60.6
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.9e-99 366.7 343 56.6
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 3.3e-99 365.9 288 63.5
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.6e-98 363.6 361 54.6
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 2.1e-98 363.2 287 62.0
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 2.1e-98 363.2 282 61.7
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 4.7e-98 362.1 362 52.8
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.1e-97 360.9 287 62.0
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 5.3e-97 358.6 289 61.6
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.7e-95 353.6 306 57.8
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 2.9e-95 352.8 247 67.6
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 5.4e-94 348.6 314 56.4
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 1.2e-93 347.4 287 57.8
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 1.6e-93 347.1 291 60.5
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 6.0e-93 345.1 335 54.6
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 4.0e-89 332.4 285 56.8
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 5.8e-88 328.6 282 60.6
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 4.2e-86 322.4 318 51.6
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 7.1e-86 321.6 289 55.0
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 4.6e-85 318.9 321 53.0
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 8.7e-84 314.7 307 55.7
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-81 305.4 270 56.3
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 7.1e-78 295.0 285 53.7
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.2e-77 294.3 271 56.1
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 2.8e-74 283.1 289 51.2
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.5e-67 260.8 305 46.2
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 1.6e-66 257.3 309 45.3
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 2.5e-62 243.4 259 48.6
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 1.7e-58 230.7 293 41.3
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 1.3e-55 221.1 154 67.5
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 5.5e-54 215.7 324 40.1
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 5.7e-51 205.7 229 47.2
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 8.2e-50 201.8 146 64.4
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 1.4e-49 201.1 202 51.5
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 9.4e-46 188.3 279 41.2
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 1.1e-43 181.4 136 61.8
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 8.0e-37 158.7 362 32.0
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 1.5e-35 154.5 300 38.7
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 3.6e-29 133.3 162 43.8
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.1e-25 121.7 143 42.0
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 2.3e-23 114.0 80 65.0
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 4.0e-20 103.2 67 71.6
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 3.7e-18 96.7 99 46.5
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.2e-11 75.1 150 34.0
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 3.2e-09 67.0 151 35.1
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 4.6e-08 63.2 194 28.4
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 4.6e-08 63.2 157 31.2
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 7.8e-08 62.4 148 31.8
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 7.8e-08 62.4 163 31.9
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 7.8e-08 62.4 152 30.9
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.3e-07 61.6 152 31.6
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.3e-07 61.6 152 31.6
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.7e-07 61.2 152 31.6
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 2.3e-07 60.8 150 30.7
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 3.0e-07 60.5 152 30.9
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 3.0e-07 60.5 205 28.3
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 3.9e-07 60.1 152 31.6
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 3.9e-07 60.1 167 32.9
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 5.0e-07 59.7 157 30.6
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 6.6e-07 59.3 58 46.6
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 6.6e-07 59.3 58 46.6
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 6.6e-07 59.3 170 31.8
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 6.6e-07 59.3 170 31.2
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 6.6e-07 59.3 170 31.2
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.6e-07 59.3 150 30.7
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 6.6e-07 59.3 207 28.5
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 8.6e-07 58.9 151 32.5
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 8.6e-07 58.9 151 32.5
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 1.1e-06 58.5 55 49.1
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.1e-06 58.5 150 32.0
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.1e-06 58.5 150 32.0
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.5e-06 58.2 189 31.7
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.5e-06 58.2 158 30.4
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.5e-06 58.2 157 29.9
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.5e-06 58.2 189 30.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.5e-06 58.2 189 30.2
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.5e-06 58.2 210 29.0
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.9e-06 57.8 151 32.5
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.9e-06 57.8 170 31.2
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.9e-06 57.8 152 31.6
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 1.9e-06 57.8 190 28.4
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 2.5e-06 57.4 167 30.5
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 2.5e-06 57.4 161 29.2
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 3.3e-06 57.0 154 33.1
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 4.3e-06 56.6 174 29.3
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 4.3e-06 56.6 193 29.0
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 4.3e-06 56.6 192 27.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 5.6e-06 56.2 222 27.5
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 5.6e-06 56.2 153 31.4
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 5.6e-06 56.2 154 31.8
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 5.6e-06 56.2 154 31.8
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 9.5e-06 55.5 154 31.8
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 9.5e-06 55.5 170 28.2


User provided reference genes

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