Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 1.4e-145 519.6 259 100.0
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 3.1e-142 508.4 259 98.5
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 4.1e-134 481.5 259 91.9
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 6.0e-117 424.5 261 82.0
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 4.9e-111 404.8 263 78.3
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 2.4e-110 402.5 261 78.9
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.6e-101 373.2 263 74.5
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 3.6e-98 362.1 261 69.0
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 8.1e-98 360.9 251 70.9
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 1.8e-97 359.8 259 67.2
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 4.0e-97 358.6 251 70.5
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 2.6e-96 355.9 249 69.9
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 3.4e-96 355.5 246 70.3
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.7e-95 353.2 251 68.5
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 3.8e-95 352.1 266 65.8
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 4.9e-95 351.7 261 65.5
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 4.9e-95 351.7 246 70.3
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.1e-94 350.5 251 68.5
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.4e-94 350.1 249 66.7
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.4e-94 350.1 256 68.8
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 3.2e-94 349.0 267 64.8
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 4.2e-94 348.6 271 63.8
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 9.2e-94 347.4 247 66.8
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.2e-93 347.1 252 66.7
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 1.2e-93 347.1 260 65.8
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.6e-93 346.7 262 63.7
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.1e-93 346.3 262 63.7
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 3.5e-93 345.5 250 69.6
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 3.5e-93 345.5 248 67.3
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.0e-92 344.0 244 68.4
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 2.3e-92 342.8 245 66.5
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 2.3e-92 342.8 246 66.7
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 3.0e-92 342.4 268 65.3
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 3.9e-92 342.0 249 66.7
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 5.1e-92 341.7 258 65.9
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 6.6e-92 341.3 246 67.1
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.9e-91 339.7 265 63.8
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 4.3e-91 338.6 268 64.2
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 4.3e-91 338.6 248 67.7
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 5.6e-91 338.2 260 64.6
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 7.3e-91 337.8 246 66.3
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.2e-90 337.0 257 65.0
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.6e-90 336.7 248 68.1
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.1e-90 336.3 246 64.6
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 6.2e-90 334.7 266 63.5
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 8.1e-90 334.3 262 62.2
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 8.1e-90 334.3 246 64.6
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 8.1e-90 334.3 257 64.2
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 8.1e-90 334.3 257 64.6
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.1e-89 334.0 257 64.6
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 1.4e-89 333.6 244 64.8
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 5.3e-89 331.6 257 63.8
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.2e-88 330.5 268 62.7
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.2e-88 330.5 246 65.4
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 2.6e-88 329.3 273 60.8
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 3.4e-88 328.9 242 68.2
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 7.6e-88 327.8 247 66.8
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.3e-87 327.0 247 66.4
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 1.3e-87 327.0 243 66.3
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 2.2e-87 326.2 263 63.1
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.9e-87 325.9 262 61.5
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.4e-86 323.6 257 61.9
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 1.4e-86 323.6 248 65.3
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.9e-86 323.2 246 64.2
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.4e-86 322.8 226 69.5
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 5.4e-86 321.6 260 61.9
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 7.1e-86 321.2 257 62.3
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 1.2e-85 320.5 258 63.2
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 1.6e-85 320.1 246 65.9
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.6e-85 320.1 260 62.7
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 2.1e-85 319.7 257 61.9
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 2.7e-85 319.3 246 63.0
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 3.5e-85 318.9 260 62.3
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 4.6e-85 318.5 251 62.9
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 4.6e-85 318.5 248 62.9
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.0e-84 317.4 246 65.4
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.0e-84 317.4 261 61.7
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 5.1e-84 315.1 261 62.5
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 1.1e-83 313.9 253 61.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.5e-83 313.5 225 68.9
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 2.4e-81 306.2 256 61.3
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 6.9e-81 304.7 255 61.6
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 3.4e-80 302.4 245 58.8
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 2.9e-79 299.3 246 60.2
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 3.8e-79 298.9 263 58.9
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 3.8e-79 298.9 244 61.9
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 1.1e-78 297.4 221 65.6
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.4e-78 297.0 209 69.4
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 2.4e-78 296.2 253 60.5
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 1.6e-77 293.5 265 57.4
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.3e-76 290.4 244 61.9
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 6.7e-76 288.1 246 60.2
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 5.3e-73 278.5 258 58.1
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.1e-67 260.8 229 57.6
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.6e-66 256.9 186 69.4
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 5.1e-60 235.3 264 48.9
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 7.4e-59 231.5 234 48.7
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 2.0e-56 223.4 234 50.9
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 5.5e-54 215.3 243 46.9
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 7.2e-54 214.9 178 59.0
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 5.3e-49 198.7 141 68.1
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 5.3e-49 198.7 154 64.3
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.2e-45 187.6 268 41.4
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 4.4e-43 179.1 157 58.0
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 3.5e-40 169.5 233 44.6
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 5.9e-40 168.7 281 38.1
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 3.2e-38 162.9 141 61.7
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 1.2e-37 161.0 242 40.5
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.0e-31 141.4 107 62.6
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.5e-30 136.7 104 62.5
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 6.5e-23 112.1 120 51.7
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 5.7e-19 99.0 156 42.3
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 3.5e-16 89.7 68 60.3
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 5.5e-14 82.4 227 27.8
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 9.5e-14 81.6 225 27.6
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 9.5e-14 81.6 183 28.4
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 2.8e-13 80.1 183 28.4
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 6.1e-13 79.0 187 27.3
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 8.0e-13 78.6 183 26.8
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.4e-12 77.8 185 27.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.4e-12 77.8 185 27.6
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.4e-12 77.8 183 25.7
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 1.8e-12 77.4 184 26.6
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 2.3e-12 77.0 185 27.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 2.3e-12 77.0 185 27.6
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 4.0e-12 76.3 185 25.9
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 5.2e-12 75.9 228 25.4
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 5.2e-12 75.9 234 25.6
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 6.8e-12 75.5 186 24.2
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 6.8e-12 75.5 183 25.1
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 6.8e-12 75.5 183 25.1
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 8.9e-12 75.1 185 26.5
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.2e-11 74.7 186 24.2
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 1.2e-11 74.7 183 25.7
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 1.5e-11 74.3 185 25.9
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 1.3e-10 71.2 184 27.7
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.7e-10 70.9 235 25.1
Pp3c2_13270 Physcomitrium patens HOM05D002933 ORTHO05D007742 1.7e-10 70.9 184 27.7
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 8.3e-10 68.6 186 25.3
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 1.5e-06 57.8 99 30.3
SMO367G0292 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 1.9e-06 57.4 97 29.9
SMO367G0293 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 1.9e-06 57.4 97 29.9


User provided reference genes

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