Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 0.0e+00 1711.0 843 100.0
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 0.0e+00 1666.0 843 97.4
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 0.0e+00 1605.9 843 94.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 0.0e+00 1457.6 849 85.4
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1392.9 868 79.3
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1392.9 868 79.3
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1365.9 868 77.6
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 0.0e+00 1305.8 856 76.5
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.3e-266 923.3 850 56.9
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 4.9e-245 851.7 866 53.0
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.4e-245 850.9 854 52.9
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.1e-243 846.3 854 52.6
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.1e-236 823.9 857 52.6
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.6e-235 818.5 845 51.8
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.8e-234 816.6 856 51.6
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.6e-227 792.0 860 51.0
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.7e-226 788.1 860 50.3
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 4.8e-224 781.9 866 50.9
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.4e-222 775.8 856 48.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 5.8e-222 775.0 854 49.6
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-221 773.9 850 48.6
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 4.9e-221 771.9 850 48.7
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.5e-221 771.5 890 48.7
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 2.5e-220 769.6 856 49.5
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.1e-219 766.5 862 48.3
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.7e-219 766.1 890 48.2
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 3.5e-219 765.8 874 48.9
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.3e-218 763.1 863 49.1
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.1e-217 760.8 851 49.1
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.4e-215 753.8 855 48.0
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.5e-214 750.4 895 48.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.4e-214 749.2 855 48.8
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.2e-213 746.5 854 48.5
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.2e-213 746.5 861 47.7
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 8.5e-213 744.6 857 48.0
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 9.4e-212 741.1 852 47.5
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.2e-211 740.7 858 47.4
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.3e-210 736.5 841 47.7
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 6.7e-210 734.9 857 47.4
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.2e-208 729.9 859 47.3
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.8e-207 726.9 870 46.9
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.4e-207 726.5 863 47.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.0e-205 718.8 883 46.3
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 2.5e-204 716.5 843 47.6
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 6.1e-203 711.8 874 45.9
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-202 710.3 861 45.8
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.1e-202 708.8 856 46.4
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.7e-202 708.4 879 45.8
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 5.3e-199 698.7 883 45.9
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.5e-198 697.2 850 46.0
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.0e-198 696.8 867 46.3
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.8e-197 692.6 860 46.2
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.8e-197 692.6 860 46.2
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.1e-196 691.0 895 46.0
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.9e-196 690.3 837 46.6
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 3.2e-196 689.5 883 47.5
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-195 687.6 922 44.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 2.3e-194 683.3 878 45.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 3.3e-193 679.5 888 45.8
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 3.3e-193 679.5 874 46.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.7e-192 676.0 962 43.5
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.1e-191 674.5 853 45.8
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.4e-191 674.1 888 45.6
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 9.1e-191 671.4 851 45.9
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.6e-190 670.6 847 46.0
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.6e-190 669.8 855 46.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 3.5e-190 669.5 879 44.3
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 3.8e-189 666.0 857 45.4
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 6.5e-189 665.2 857 46.0
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.5e-188 663.3 843 46.0
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.2e-188 662.5 869 44.1
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.7e-187 659.8 874 43.9
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 3.6e-187 659.4 862 45.9
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.6e-187 659.4 868 45.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.3e-186 656.8 801 46.1
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.2e-186 655.6 845 46.4
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 9.7e-185 651.4 851 44.9
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 9.7e-185 651.4 851 44.9
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.7e-184 649.4 844 44.5
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.1e-183 647.9 861 43.4
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.1e-183 647.9 871 41.7
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.4e-183 646.7 736 47.0
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 3.1e-183 646.4 853 45.6
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 7.0e-183 645.2 866 43.8
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.0e-182 643.7 865 43.5
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.0e-181 641.3 868 43.5
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.2e-181 640.2 847 44.2
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 9.4e-180 634.8 859 44.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.0e-178 629.8 728 47.4
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.2e-177 627.9 857 44.6
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 7.5e-177 625.2 863 43.2
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-176 624.4 736 46.3
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.7e-176 624.0 855 43.4
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.7e-176 624.0 855 43.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 3.8e-173 612.8 614 52.3
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 5.5e-172 609.0 805 44.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.0e-170 604.7 912 41.8
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 4.5e-166 589.3 787 40.9
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.1e-164 584.7 920 41.3
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.6e-163 579.7 740 43.9
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.1e-159 568.2 904 38.4
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 4.1e-159 566.2 857 42.7
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 2.3e-157 560.5 875 39.4
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 2.0e-153 547.4 682 44.6
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.8e-146 524.2 658 45.6
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 9.2e-143 511.9 684 42.3
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.5e-142 510.0 596 47.5
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.7e-136 491.1 783 39.2
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.7e-133 478.8 646 42.4
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.6e-132 476.1 611 44.2
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 7.3e-132 475.7 545 49.9
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.8e-129 466.1 630 44.0
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.4e-122 444.9 876 36.9
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.4e-119 434.9 557 44.9
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 6.0e-118 429.5 640 40.6
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 2.0e-113 414.5 491 48.3
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.1e-98 363.6 542 42.3
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.6e-97 360.9 356 50.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.0e-93 349.0 549 38.6
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.3e-91 342.0 490 43.1
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.4e-89 334.0 559 39.5
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.9e-88 330.9 652 35.0
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 3.6e-86 323.9 951 29.3
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 2.3e-85 321.2 449 42.3
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 7.7e-81 306.2 372 48.4
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 6.1e-78 296.6 1068 26.8
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 7.5e-68 263.1 523 33.1
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.7e-67 260.8 214 64.5
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 2.5e-63 248.1 647 28.1
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 5.5e-63 246.9 297 46.1
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 2.3e-61 241.5 190 68.4
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 9.5e-55 219.5 307 43.3
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 8.9e-53 213.0 166 63.9
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 2.7e-49 201.4 177 61.0
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.9e-47 195.3 201 52.2
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.3e-47 193.4 155 66.5
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.8e-46 191.4 337 37.7
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 6.4e-43 180.3 181 53.0
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 3.5e-41 174.5 181 50.8
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.8e-37 162.2 194 50.0
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 2.3e-37 161.8 149 61.1
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.2e-36 159.5 117 63.2
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 9.8e-36 156.4 123 65.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 6.4e-35 153.7 258 40.3
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.4e-34 152.5 149 56.4
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.7e-33 148.3 146 57.5
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 3.9e-32 144.4 264 33.7
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-30 139.0 146 56.2
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.4e-29 136.0 135 57.8
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.8e-29 135.6 125 52.8
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 6.8e-29 133.7 1108 21.8
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 1.2e-28 132.9 125 51.2
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 4.4e-28 131.0 130 56.2
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 4.4e-28 131.0 205 38.0
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-27 129.4 146 50.7
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.2e-27 128.6 450 25.6
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.2e-27 128.6 141 43.3
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.6e-25 120.9 98 61.2
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 6.0e-25 120.6 96 62.5
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.6e-24 116.7 90 64.4
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.2e-22 112.8 304 28.3
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 3.6e-22 111.3 245 30.6
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 7.6e-20 103.6 90 68.9
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 9.9e-20 103.2 87 58.6
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.1e-18 99.8 255 27.8
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.1e-18 97.1 99 47.5
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.6e-14 85.9 195 35.9
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 3.6e-14 84.7 62 71.0
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 4.8e-14 84.3 305 25.2
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 4.0e-13 81.3 118 39.0
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 4.0e-13 81.3 59 71.2
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 6.9e-13 80.5 80 56.2
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 7.6e-12 77.0 100 52.0
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 2.1e-09 68.9 239 27.6
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.5e-09 68.2 59 64.4
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.1e-07 63.2 62 56.5
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.6e-07 60.8 67 46.3
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.6e-07 60.1 49 55.1
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.3e-06 59.7 56 50.0


User provided reference genes

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